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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43710.1 | AT | Plant stearoyl-acyl-carrier-protein desaturase family protein | JGI | N/A | IEA |
| GO:0006629 | GO-bp | lipid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006631 | GO-bp | fatty acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006631 | GO-bp | fatty acid metabolic process | JGI | N/A | IEA |
| GO:0006633 | GO-bp | fatty acid biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0045300 | GO-mf | acyl-[acyl-carrier-protein] desaturase activity | EnsemblGenomes | N/A | IEA |
| GO:0045300 | GO-mf | acyl-[acyl-carrier-protein] desaturase activity | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0102786 | GO-mf | stearoyl-[acp] desaturase activity | EnsemblGenomes | N/A | IEA |
| PF03405 | PFAM | Fatty acid desaturase | JGI | N/A | IEA |
| PWY-5147 | SoyCyc9 | oleate biosynthesis I (plants) | Plant Metabolic Network | ISS | |
| PWY-5156 | SoyCyc9 | superpathway of fatty acid biosynthesis II (plant) | Plant Metabolic Network | ISS | |
| GN7V-54152 | SoyCyc9-rxn | stearoyl-[acyl-carrier-protein] 9-desaturase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| ACPD | stearoyl-acyl carrier protein desaturase | |
| ACPD-1 | stearoyl-acyl carrier protein desaturase gene 1 | |
| FAB2 | ||
| SACPD | stearoyl-acyl carrier protein desaturase | |
| SAD1 | stearoyl-acyl carrier protein desaturase |
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Glyma.02g138100 not represented in the dataset |
Glyma.02g138100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g207200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g15600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g138100.1 sequence-type=CDS polypeptide=Glyma.02g138100.1.p locus=Glyma.02g138100 ID=Glyma.02g138100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTCTGAGACTGAACCCTATCCCCACCCAAACCTTCTCCCTCCCCCAAATGGCCAGTCTCAGATCTCCCAGGTTCCGCATGGCCTCCACCCTCCGCTCCGGTTCCAAAGAGGTTGAAAATATTAAGAAGCCATTCACTCCTCCCAGAGAAGTGCATGTTCAAGTAACCCACTCTATGCCTCCTCAGAAGATTGAGATTTTCAAATCTTTGGAGGATTGGGCTGAGCAGAACATCTTGACTCATCTTAAACCTGTTGAAAAATGTTGGCAACCACAAGATTTTTTACCGGATCCTTCCTCTGATGGATTTGAAGAGCAAGTGAAGGAACTGAGAGAGAGGGCAAAGGAGCTTCCAGATGATTACTTTGTTGTTCTGGTCGGAGACATGATCACAGAGGAAGCCCTGCCTACTTACCAAACAATGTTAAATACTTTGGATGGAGTTCGTGATGAAACAGGTGCCAGCCTTACTTCCTGGGCAATTTGGACAAGGGCATGGACTGCTGAAGAAAACAGACACGGTGATCTTCTTAACAAATATCTTTACTTGAGTGGTCGAGTTGACATGAAACAAATTGAAAAGACAATTCAGTACCTTATTGGGTCTGGAATGGATCCTCGAACCGAGAACAGCCCCTACCTTGGTTTCATTTACACTTCATTTCAAGAGAGGGCAACCTTCATATCCCACGGAAACACAGCCAGGCTTGCTAAGGAGCACGGCGATATAAAGTTGGCCCAGATCTGCGGCATGATTGCCTCAGATGAGAAACGCCATGAGACTGCATACACGAAGATAGTGGAAAAGCTATTTGAGGTCGATCCTGACGGTACAGTTATGGCGTTTGCCGACATGATGAGGAAGAAGATTGCCATGCCAGCACACCTCATGTATGACGGCCGTGATGACAACCTGTTTGATAGCTACTCTTCGGTCGCGCAGCGCATTGGGGTCTACACCGCCAAGGACTATGCTGACATACTTGAGTTTCTGGTGGGGAGGTGGAAGGTGGAGCAGCTAACTGGACTTTCAGGCGAGGGAAGAAAGGCTCAAGAATACATTTGCGGGCTGCCGCCAAGAATCAGAAGGTTGGAGGAGAGAGCTCAAGCAAGAGTCAAGGAGTCGTCAACACTTAAATTCAGTTGGATTCATGACAGGGAAGTACTACTCTAA
>Glyma.02g138100.1.p sequence-type=predicted peptide transcript=Glyma.02g138100.1 locus=Glyma.02g138100 ID=Glyma.02g138100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALRLNPIPTQTFSLPQMASLRSPRFRMASTLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFKSLEDWAEQNILTHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGMIASDEKRHETAYTKIVEKLFEVDPDGTVMAFADMMRKKIAMPAHLMYDGRDDNLFDSYSSVAQRIGVYTAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYICGLPPRIRRLEERAQARVKESSTLKFSWIHDREVLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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