Glyma.02g137200

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Report for Sequence Feature Glyma.02g137200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	14188791
stop:	14194760
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g137200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G73180.1	AT	Eukaryotic translation initiation factor eIF2A family protein	JGI	N/A	IEA
GO:0006412	GO-bp	translation	EnsemblGenomes	N/A	IEA
GO:0006413	GO-bp	translational initiation	EnsemblGenomes	N/A	IEA
GO:0006417	GO-bp	regulation of translation	EnsemblGenomes	N/A	IEA
GO:0022627	GO-cc	cytosolic small ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0000049	GO-mf	tRNA binding	EnsemblGenomes	N/A	IEA
GO:0003729	GO-mf	mRNA binding	EnsemblGenomes	N/A	IEA
GO:0003743	GO-mf	translation initiation factor activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0043022	GO-mf	ribosome binding	EnsemblGenomes	N/A	IEA
KOG2315	KOG	Predicted translation initiation factor related to eIF-3a	JGI	N/A	IEA
PTHR13227	Panther	NUCLEASE-RELATED	JGI	N/A	IEA
PF08662	PFAM	Eukaryotic translation initiation factor eIF2A	JGI	N/A	IEA

Expression Patterns of Glyma.02g137200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g137200 not represented in the dataset	Glyma.02g137200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g137200

Paralog	Evidence	Comments
Glyma.07g208200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g137200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g15500	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g137200

Limit To All Plant Sequences

>Glyma.02g137200.2 sequence-type=transcript locus=Glyma.02g137200 ID=Glyma.02g137200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCGTAACTGAACTGAGTTCCCTCTCCGGCGAGACAGTAAGTAACAAGCTTTTCAATTTCTCCGTCGTTTGGCTTCCAATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGGTACCCAATCACAGAATCTATTCTCCTTCTTTCTTTCTATTCTTAATTGTCAATATAAATTTTCAGCAATACTTGAGCATGGCATAACTTTATAGCCAAATTGTTTTGCTATATGCATGTTTATGCATCTTTCCATGAACTCTTGGAGCCGAGTTTCATTTTTTAGTTTGTCTCTGATGATGCCTAAATGATCTGTATTTGCAGTTGTTTGGAGAGACTACTGCAGAAACACTGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCATGATGGAATCAATGTTCTTCCTGACTCGTTCTAAATTGCTTTTCTACTACTGCACTCGCGCACCTGAAAATTTGAGGCTTTCAGATTTTGGTTTACTGGCAACTTTGGGCAGTTTTGGTTTGCTCAGATTTTGACGTGATTGAAGTCATGTTGTAGGTTTGTGCTTTCTTGAGTTTTCAGCTGGGATATAAAAGGTGGGAGAAGATAAATCTCTTTATCCTCATGATAAAAGAAGTATTTATTGTAAGAGAAGTGAAATTATACGTTGGTCACAAACATTATTTTGTTTCCGGTTGGGATATAAAAGGTGAGAGTAGAAGATAAATGCCCCTTTCTCCTCCCGATAAAATATGTATTTTTTGCAAGAGAAATGGAATTATAAGTAGGGTGCTTCACACGCGTGTACGTACATGCACACACGGGCATAAGAGTATATGGACAAGAAGTGTAGTTTCTAATACATACGGACAAAGTACAAAAAGAAACAAGAACAAAACTTAAATGTAG

Coding sequences of Glyma.02g137200

Limit To All Plant Sequences

>Glyma.02g137200.1 sequence-type=CDS polypeptide=Glyma.02g137200.1.p locus=Glyma.02g137200 ID=Glyma.02g137200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGTTGTTTGGAGAGACTACTGCAGAAACACTGAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCATGA

>Glyma.02g137200.2 sequence-type=CDS polypeptide=Glyma.02g137200.2.p locus=Glyma.02g137200 ID=Glyma.02g137200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATCAAATAACCACTCACCACCTCTCGAGATATTAGTTCGAGGACCAGAAGATTTCTCGCTCTGGACCGGACCTCCCTTCGCGAACGGTCAACCAAGCATCAAGCTCGAGAAAGTGAAATGCATCAACGCGAAGTTCAGCGACGACGGATCCAAGCTCATGGTGACAAAATCGAACTCGCTGATTAGCGTCTACGATTGCAGAATCGCCGAAGAGATTAGGGCTTTTGAAGTCCCCAATGTCGTCGCCGCAGCTTTGTCGCCCAATGGAACTTACTTGCAGACCTTCCAGAAGCCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGCATCGAGACCGGTGCTGCTGTTCACCAGCAGTCACAGAAGAACATGACCAAAGCCAATTGGCCTGCAATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTACAATTTTTTGATACTGGGGATTTTTCGAAAGGAGTTGTCTGTCGGTTAAGAGTTCCCGGAGTTGCTGCTGCTGAGCTTTCTAGTTTACCAGGGTCTCATGTAGCTGCATTTGTTCCAGAATCCAAGGGGGTTCCTGCTAGTGTACAGATATTTGCTTGTGGAAATGCGTCTCAAAGTCAACCTGTTGCTCGACGTAGTTTTTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAGTTATGCTATCTGACCACGGATGGGATGCATGAAGGACTTGTGCCTCTTCGGAAAGATGGGCCCATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTATATGGATTTATGCCTGCTAAAGCAACTCTGTTCGACAAGAAGTGCAATCCTCTACTAGAGCTTGGAACTGGTCCTTACAACACTATTCGCTGGAACCCAAAAGGGAAATTTTTGTGTTTGGCTGGCTTTGGTAACTTGCCTGGTGATATGGTATTCTGGGATTACATTGATAAGAAACAACTTGGAGCCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCTCCGGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGATCAAGATTTTTCACTACAATGGGTCATTGTACTTCAAGAAGATGTTTGACAAATTGTACCAGGTTGATTGGAAACCAGAGTCACCTGGTAAGTTTGGTGATATTGCCGAATTAATTAAGTCTCTAAATTTGGTACAACTTGAAGATAAAAAACCATCAGGTCAAGGACCACCAAAGTCTACCCAGACTTCTACAAAGGCCTCTTCTGCCAACCCCACAACACAAAAACCTGCTGCATATCGTCCACCACATGCTAAGAATGCATCTGCTATTCAGGCAGAGGTACCCAATCACAGAATCTATTCTCCTTCTTTCTTTCTATTCTTAATTGTCAATATAAATTTTCAGCAATACTTGAGCATGGCATAA

Predicted protein sequences of Glyma.02g137200

Limit To All Plant Sequences

>Glyma.02g137200.1.p sequence-type=predicted peptide transcript=Glyma.02g137200.1 locus=Glyma.02g137200 ID=Glyma.02g137200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASNNHSPPLEILVRGPEDFSLWTGPPFANGQPSIKLEKVKCINAKFSDDGSKLMVTKSNSLISVYDCRIAEEIRAFEVPNVVAAALSPNGTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQTSTKASSANPTTQKPAAYRPPHAKNASAIQAELFGETTAETLSKNALRNKKKREKQKEKKAASDASSS*

>Glyma.02g137200.2.p sequence-type=predicted peptide transcript=Glyma.02g137200.2 locus=Glyma.02g137200 ID=Glyma.02g137200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASNNHSPPLEILVRGPEDFSLWTGPPFANGQPSIKLEKVKCINAKFSDDGSKLMVTKSNSLISVYDCRIAEEIRAFEVPNVVAAALSPNGTYLQTFQKPSAPQEKNVTLWSIETGAAVHQQSQKNMTKANWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVVCRLRVPGVAAAELSSLPGSHVAAFVPESKGVPASVQIFACGNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKFLCLAGFGNLPGDMVFWDYIDKKQLGATKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGIKIFHYNGSLYFKKMFDKLYQVDWKPESPGKFGDIAELIKSLNLVQLEDKKPSGQGPPKSTQTSTKASSANPTTQKPAAYRPPHAKNASAIQAEVPNHRIYSPSFFLFLIVNINFQQYLSMA*

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