SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G15620.1 | AT | nitrite reductase 1 | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0048307 | GO-mf | ferredoxin-nitrite reductase activity | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| KOG0560 | KOG | Sulfite reductase (ferredoxin) | JGI | N/A | IEA |
| PTHR11493 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR11493:SF37 | Panther | JGI | N/A | IEA | |
| PF01077 | PFAM | Nitrite and sulphite reductase 4Fe-4S domain | JGI | N/A | IEA |
| PF03460 | PFAM | Nitrite/Sulfite reductase ferredoxin-like half domain | JGI | N/A | IEA |
| PWY-381 | SoyCyc9 | nitrate reduction II (assimilatory) | Plant Metabolic Network | ISS | |
| GN7V-51996 | SoyCyc9-rxn | ferredoxin-nitrite reductase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| NIR1-1 | nitrate reductase 1 gene 1 | |
| NIR | nitrate reductase |
|
Glyma.02g132100 not represented in the dataset |
Glyma.02g132100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g212800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g14910 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g132100.1 sequence-type=CDS polypeptide=Glyma.02g132100.1.p locus=Glyma.02g132100 ID=Glyma.02g132100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTACACGTTCCTTCTTCTTCTTCCAATAATGTCTTCTTCATTCTCTGTTCGTTTTCTTGCTCCTCTTCCTCCATCATCATCATCATGCTTCCCCACCAGCTCTCTGCCGAAGACATGGCTCTGCGCCGCCGCCACCCCAACGGTGGCTCCGTCAACCACCACCTCCTCCTCGGAGGTGGAGGCTTCCAGGTTGGAGCCTAGAGTGGAGGAGAGAGATGGGTTCTGGGTTTTAAAGGAAGAGTACAGGGGAGGCATCAGCCCTCAGGAGAAAGTGAAGCTTGAGAAAGATCCCATGAAGCTTTTCATGGAAGGTGGGATTGAGGAATTGGCTAAGATGTCCCTTGAAGAAATTGAGAGCTCCAAGCACACCAAGGATGATATTGATGTTAGACTCAAGTGGCTTGGCCTTTTTCATAGGAGAAAGCAGCATCATGGTAGATTTATGATGAGGCTGAAGCTTCCAAATGGGGTGACAACAAGTGCCCAAACACGATACTTGGCTAGTGTGATAAGGAAATACGGAAAAGATGGGTGTGCTGATGTAACAACGAGGCAGAATTGGCAAATTCGTGGTGTGGTGCTACCTGATGTGCCAGAAATTCTAAAGGGCCTCGACGAGGTTGGATTGACTAGTCTTCAGAGTGGAATGGACAATGTGAGAAATCCTGTTGGTAACCCTCTTGCAGGCATTGACCCTGATGAGATTGTTGACACTCGACCATACAACAACTTGTTATCTCAATTCATCACTGCCAATTCACGTGGCAACCCCGCCATGTCAAACTTGCCTAGGAAGTGGAATGTGTGTGTGGTTGGATCCCATGATCTGTTTGAGCATCCACACATCAATGATCTGGCTTACATGCCTGCAAACAAGGATGGTCGTTTTGGATTCAACTTACTTGTTGGTGGTTTCTTCAGTGCCAAGAGATGTGCTGAAGCAATTCCACTTGATGCATGGGTCTCCGCAGATGATGTAATCCCACTTTGTAAAGCTGTCCTTGAGGCCTATAGGGACCTTGGCTTCAGAGGGAACAGACAGAAAACAAGAATGATGTGGTTGATTGACGAATTGGGGATAGAAGTATTCAGGTCAGAGGTGGAGAAAAGAATGCCAGGGAAGAAGCTGGAGAGAGCATCTAAGGAAGAACTGGTTAAGAAACAATGGGAAAGAAGAGACTACTTAGGTGTTCATCCACAGAAACAAGAGGGCCTAAGCTATGTTGGGATTCACATTCCAGTTGGTAGAGTCCAAGCAGATGACATGGATGAGTTGGCTCGTTTAGCCGACGAATACGCCACCGGTGAGCTCAGGCTCACAGTGGAGCAGAACATTATAATCCCAAATGTGGACAATAACAAAATTGATGGCTTGCTCAATGAGCCTCTCTTGAAGGGGAGATTCTCACCCGAACCTTCTCTATTGATGAAGACTCTGGTGGCATGCACTGGTAATCAATTTTGTGGACAAGCTATAATTGAGACAAAGGAAAGGGCATTGAAAGTGACTGAGGAAGTGGAGAGGCAAGTGGCTGTGACTAGGCCTGTGAGAATGCATTGGACTGGCTGCCCTAACACTTGTGGACAGGTTCAAGTTGCTGACATTGGTTTCATGGGGTGCATGGCTAGGGATGACAATGGTAAGGCCACTGAAGGTGTGGATATTTTCCTTGGAGGGAGAATTGGAAGTGATTCACATCTGGCTCAAGTGTATAAGAAGGGTGTGCCTTGCAAGGACTTGGTGCCTGTTGTGGTAGACATACTAGTAAAACACTTTGGAGCTGTCCTAAGGAATAGAGAGGAAGGGGAAGATTAA
>Glyma.02g132100.1.p sequence-type=predicted peptide transcript=Glyma.02g132100.1 locus=Glyma.02g132100 ID=Glyma.02g132100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MYTFLLLLPIMSSSFSVRFLAPLPPSSSSCFPTSSLPKTWLCAAATPTVAPSTTTSSSEVEASRLEPRVEERDGFWVLKEEYRGGISPQEKVKLEKDPMKLFMEGGIEELAKMSLEEIESSKHTKDDIDVRLKWLGLFHRRKQHHGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPDEIVDTRPYNNLLSQFITANSRGNPAMSNLPRKWNVCVVGSHDLFEHPHINDLAYMPANKDGRFGFNLLVGGFFSAKRCAEAIPLDAWVSADDVIPLCKAVLEAYRDLGFRGNRQKTRMMWLIDELGIEVFRSEVEKRMPGKKLERASKEELVKKQWERRDYLGVHPQKQEGLSYVGIHIPVGRVQADDMDELARLADEYATGELRLTVEQNIIIPNVDNNKIDGLLNEPLLKGRFSPEPSLLMKTLVACTGNQFCGQAIIETKERALKVTEEVERQVAVTRPVRMHWTGCPNTCGQVQVADIGFMGCMARDDNGKATEGVDIFLGGRIGSDSHLAQVYKKGVPCKDLVPVVVDILVKHFGAVLRNREEGED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
