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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34030.1 | AT | 3-methylcrotonyl-CoA carboxylase | JGI | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0016874 | GO-mf | ligase activity | JGI | N/A | IEA |
| KOG0540 | KOG | 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta | JGI | N/A | IEA |
| PTHR22855 | Panther | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED | JGI | N/A | IEA |
| PTHR22855:SF13 | Panther | METHYLCROTONOYL-COA CARBOXYLASE BETA CHAIN, MITOCHONDRIAL | JGI | N/A | IEA |
| PF01039 | PFAM | Carboxyl transferase domain | JGI | N/A | IEA |
| LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
| GN7V-56179 | SoyCyc9-rxn | methylcrotonoyl-CoA carboxylase | Plant Metabolic Network | ISS |
|
Glyma.02g131500 not represented in the dataset |
Glyma.02g131500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g213500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g14860 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g131500.2 sequence-type=transcript locus=Glyma.02g131500 ID=Glyma.02g131500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TATTTTGCAGTAACGGAAGAGAGTGGAACTGTATCCCCGTCATCGGATAAACACAATAGCTGTAGATAGAGAAGAGTGCCATTATTGATTCGCAGAAGAAGATAAGCGATGTTTGGGTTAATCGGAAGAAAGGCCTCTTTGTTGGGAGGATCAGGAAGAAGAAGAAGATGGTTGAGCTTCgcagcagcagcagcagcaacaACCACTACCAATGGTGGGGCCATGGAGGAGTTGCTTTCACAGCTCCAATCTCATGTCCAGAAGGCTCTTGCTGGTGGAGGACCCGAGGCAGTGAAGAGGAACACGAGTAGGAACAAGTTTCTGCCCCGTGAAAGAATCGATCGCCTCCTTGATCCCGGTTCTTCCTTCCTCGAGCTTTCACAGGACATTACTTGTATGAAGAACCTTTGCCTTCTGGAGGGGTTGTTACTGGGATAGGTCCTGTGCATGGGAGACTGTGTATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAAATTTCAAAATTTATTCTGCCCTAAAATATGTGGTTATCATTCAGCAATGGTGTTCTCAAGATGGTCTCAACATCCTCCACTTCAAAAATTTTCTCAAGGAGCATGTAGTTCCAACACAAACCCTCTTTATCCATCAGAACTCCCACTTCCAAATCCTTCAAGCCATTTACAAGTGGTGTTCAAATCAATGTATGACCCGTGTGCCTTAACCATGGTTCTCCCCAAACATTAACATTCTCCCCATTTTCTAGCTTCCACCTCACACCTTCCTTAAACATCATTTTGGAAAACAATATGCTTCGCCACTAAGAATATGATGGTTATTACCTAAGCCAACACCCATAAAATCCCTTTTAGGGAAGTATTTGGCTTTGAATACTCTTGTTGACAAAGCATTGGGTTTTGATATAAATCTCCACCCTTGTTTTCCTATCATGGTCAAGTTGAAAGCATAGATATTTCGGAAGCCTAAGCTCCCCCAAGCTCCATTGAGACACATAATTTTTTTCCCAAGCTAGCCAATTCATTCATTTTGATTCCCTATTACTTGACCCCCCACCAATATGAGTTATTTTGGacaagtgacctcaataacttaagggggggaggggtgaattaagttaaaaaatttctcgtttaattgacttctaaatctctttttaaatctatatgttaagaatattaaaaataaagataaaaattatatcaatagaatacttcaagtgtacaagataaataaaatatgcaagataaagtaatcaagatagggaagagagaaatacaaactcagtttatcctagttcggccacttcctgggcctacgtccagttctcaagcaatccacttgagattttcactaattttgtaaaaatactttttacaacttttgaacatttgagagatccctttcccttgtgttcaggaaactcataattcaagagacaaacaatctcttgatctcaataagtttttaaataaagtacaaatgttttctctcttttagagaaaaagatacaagatgaagttcttagaagaatccttaattgatttgcaagtgtttgatcaatgatttattttttagagataagacaataaggttctgaaaaactcttttaaaaactttcgtagataagtcacatatttataggcccttggtgatttttcaaaaacttatgaagggatgtgacttttcagaataatttttaaaattttctcactggtaatcgattacaactctttggtaatcgatcacacacttatgtaatgaggagtcatgacttttcaatttgaatttttgtagttccgttactagtaattgattacagacaagtggtaattgattacaactttc
>Glyma.02g131500.1 sequence-type=CDS polypeptide=Glyma.02g131500.1.p locus=Glyma.02g131500 ID=Glyma.02g131500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTGGGTTAATCGGAAGAAAGGCCTCTTTGTTGGGAGGATCAGGAAGAAGAAGAAGATGGTTGAGCTTCGCAGCAGCAGCAGCAGCAACAACCACTACCAATGGTGGGGCCATGGAGGAGTTGCTTTCACAGCTCCAATCTCATGTCCAGAAGGCTCTTGCTGGTGGAGGACCCGAGGCAGTGAAGAGGAACACGAGTAGGAACAAGTTTCTGCCCCGTGAAAGAATCGATCGCCTCCTTGATCCCGGTTCTTCCTTCCTCGAGCTTTCACAGCTTGCAGGACATTACTTGTATGAAGAACCTTTGCCTTCTGGAGGGGTTGTTACTGGGATAGGTCCTGTGCATGGGAGACTGTGTATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAA >Glyma.02g131500.2 sequence-type=CDS polypeptide=Glyma.02g131500.2.p locus=Glyma.02g131500 ID=Glyma.02g131500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTTGTGGCGAATGATCCCACTGTTAAGGGAGGTACTTATTATCCCATTACTGTTAAGAAGCACCTCAGGGCACAGGAGATTGCTGCTCAGTGCAAATTGCCCTGCATATATCTTGTCGACAGTGGAGGAGCTTTTCTTCCCAAGCAAGCCGAAGTGTTTCCGGACAGAGAGAACTTTGGCAGAATATTCTACAATCAGGCTGTAATGTCTGCTCAAGGAATTCCTCAAATTGCATTGGTGTTGGGGTCTTGCACTGCTGGTGGCGCTTATATTCCTGCTATGGCTGATGAAAGTGTGATGGTCAAGGGAAATGGTACCATTTTTTTAGCAGGGCCACCTCTTGTTAAGGCTGCCACTGGAGAAGAAGTCTCAGCAGAAGATTTGGGAGGTGCGACTGTGCACTGCAAGACATCAGGGGTTTCTGATTATTTTGCTCAAGATGAACTCCATGCACTTGCGCTTGGGAGGAATATAATTAAGAATTTGCATATGGCTGGGAAAGATGTCTTGGCAAATGGATTGCAAAATATAAATTATGAATATAAAGAGCCATTGTATGATGTCAATGAACTTCGTTCTATTGCCCCCACTGATCTTAAGCAACAGTTTGATATTCGATCAGTTATTGATCGCATTGTTGATGGAAGTGAATTTGATGAATTCAAGAAATTGTATGGCACTACACTTGTGACAGGATTTGCTAGAATTTTTGGACAGCCTGTTGGAATTATTGGAAACAATGGGATTTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGGTTGGCTCAAGATCTGAGGCAAATGGCATAGCAAAGTCTGGTGCAAAAATGGTGATGGCTGTTTCTTGTGCAAAGGTACCTAAAGTCACTATAATGGTTGGAGGAAGCTTTGGTGCAGGAAACTATGCAATGTGCGGTCGTGCCTATAGTCCCAATTTCTTGTTCCTTTGGCCTAATGCTAGAATTTCTGTGATGGGTGGTGCTCAGGCTGCTGGTGTGCTGGCCCAAATAGAGAAAGGCAACAAGAAAAGGCAAGGAATTCAGTGGAGCAAGGAAGAAGAGGATAAGTTTAAAGGGAAAGTAGTGGAGGCTTATGAGAGAGAAGCAAGTCCTTATTACTCAACAGCTAGGCTTTGGGATGATGGAATCATTGATCCAGCGGATACAAGAAAAGTCATTGGTCTATCCATCTCTGCCTCCTTGAACCGTGACATTCAAAACACAAAATATGGTGTATTTAGAATGTAA
>Glyma.02g131500.1.p sequence-type=predicted peptide transcript=Glyma.02g131500.1 locus=Glyma.02g131500 ID=Glyma.02g131500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFGLIGRKASLLGGSGRRRRWLSFAAAAAATTTTNGGAMEELLSQLQSHVQKALAGGGPEAVKRNTSRNKFLPRERIDRLLDPGSSFLELSQLAGHYLYEEPLPSGGVVTGIGPVHGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDRENFGRIFYNQAVMSAQGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCKTSGVSDYFAQDELHALALGRNIIKNLHMAGKDVLANGLQNINYEYKEPLYDVNELRSIAPTDLKQQFDIRSVIDRIVDGSEFDEFKKLYGTTLVTGFARIFGQPVGIIGNNGILFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNARISVMGGAQAAGVLAQIEKGNKKRQGIQWSKEEEDKFKGKVVEAYEREASPYYSTARLWDDGIIDPADTRKVIGLSISASLNRDIQNTKYGVFRM* >Glyma.02g131500.2.p sequence-type=predicted peptide transcript=Glyma.02g131500.2 locus=Glyma.02g131500 ID=Glyma.02g131500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MFVANDPTVKGGTYYPITVKKHLRAQEIAAQCKLPCIYLVDSGGAFLPKQAEVFPDRENFGRIFYNQAVMSAQGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEEVSAEDLGGATVHCKTSGVSDYFAQDELHALALGRNIIKNLHMAGKDVLANGLQNINYEYKEPLYDVNELRSIAPTDLKQQFDIRSVIDRIVDGSEFDEFKKLYGTTLVTGFARIFGQPVGIIGNNGILFNESALKGAHFIELCTQRNIPLVFLQNITGFMVGSRSEANGIAKSGAKMVMAVSCAKVPKVTIMVGGSFGAGNYAMCGRAYSPNFLFLWPNARISVMGGAQAAGVLAQIEKGNKKRQGIQWSKEEEDKFKGKVVEAYEREASPYYSTARLWDDGIIDPADTRKVIGLSISASLNRDIQNTKYGVFRM*
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