Glyma.02g128000

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Report for Sequence Feature Glyma.02g128000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	13048160
stop:	13051248
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g128000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25570.1	AT	Adenosylmethionine decarboxylase family protein	JGI	N/A	IEA
GO:0006557	GO-bp	S-adenosylmethioninamine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006596	GO-bp	polyamine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006597	GO-bp	spermine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006597	GO-bp	spermine biosynthetic process	JGI	N/A	IEA
GO:0008295	GO-bp	spermidine biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008295	GO-bp	spermidine biosynthetic process	JGI	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0004014	GO-mf	adenosylmethionine decarboxylase activity	EnsemblGenomes	N/A	IEA
GO:0004014	GO-mf	adenosylmethionine decarboxylase activity	JGI	N/A	IEA
GO:0016829	GO-mf	lyase activity	EnsemblGenomes	N/A	IEA
GO:0016831	GO-mf	carboxy-lyase activity	EnsemblGenomes	N/A	IEA
KOG0788	KOG	S-adenosylmethionine decarboxylase	JGI	N/A	IEA
PTHR11570	Panther	S-ADENOSYLMETHIONINE DECARBOXYLASE	JGI	N/A	IEA
PF01536	PFAM	Adenosylmethionine decarboxylase	JGI	N/A	IEA
ARGSPECAT-PWY	SoyCyc9	spermine biosynthesis	Plant Metabolic Network		ISS
BSUBPOLYAMSYN-PWY	SoyCyc9	spermidine biosynthesis I	Plant Metabolic Network		ISS
POLYAMINSYN3-PWY	SoyCyc9	superpathway of polyamine biosynthesis II	Plant Metabolic Network		ISS
PWY-7528	SoyCyc9	L-methionine salvage cycle I (bacteria and plants)	Plant Metabolic Network		ISS
GN7V-55877	SoyCyc9-rxn	adenosylmethionine decarboxylase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g128000

Locus	Gene Symbol	Protein Name
	SAMDC	S-adenosylmethionine decarboxylase

Expression Patterns of Glyma.02g128000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g128000 not represented in the dataset	Glyma.02g128000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g128000

Paralog	Evidence	Comments
Glyma.01g071300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g128000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g14175	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g128000

Limit To All Plant Sequences

>Glyma.02g128000.2 sequence-type=transcript locus=Glyma.02g128000 ID=Glyma.02g128000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACGCACCTCTTTCTGATTGCCTTCAAATCACACACTCTCTTCAATTTCTAGGGTTTTGCTATTGCTTTGCCTCCGTTCCCCCTTTCTCACAAAAACAACGCcttttctcttctccttcgtatctGACTGAATGACCTAATGGAGTCTAAAGGTGGGAAAAAGAAGTCtagtagtagtagtagtaAATCAATTTTTTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTTAGACCAAACGGTGGAATCAAGAAATTCAGATCTGCTGCTTACTCTAACTGTTCTCGCAAACCATCCTGATACACATCCGGATTGATAGTTCGTTGCATGCAACCATAGTTTTATTAGGATTTTTTCTTCTTTGTTTTCAATTAGGTTTTTTTGTTGCTCTCCTTCAAACTCCATCTTTCCAAATCCTCTCTTTGCGATTGTGTTTTGATCTGCTTCCTACTGCGATAGTTTCTCTACTGTTACATGGCCATGGCGGTTTCCGCAATTGGTTTTGAAGGTTTCGAGAAAAGGTTGGAAATATCCTTTTTCCAGCCGGGACTTTTTGCTGACCCTGAAGGAAGGGGTCTAAGGGCTCTTACAAAATCCCAGTTGGGTGAGATTCTAACACCAGCTGCTTGCACCATTGTTTCTTCGCTCAAAAACGATAATGTCGACTCCTATGTTCTATCTGAGTCCAGCCTCTTTGTTTATGCCTACAAGATCATCATCAAAACCTGTGGTACTACTAAGCTATTGCTTGCAATCCCACCCATATTGAAGTTCGCTGAAATGCTTTCCCTTAATGTTAAGTCTGTGAATTACACCAGGGGAAGTTTCATTTTCCCCAGTGCTCAGCCATATCCCCATCGCAACTTTTCTGAGGAAGTTGCTATTCTTGATGGCTACTTTGGCAAACTTGGTGCAGGAAGCAATGCTTATATTTTGGGTGGCCAAGACAAAGCACAGAACTGGCATGTCTACTCTGCTTCTGCAGATTCTGTAACTCAATGTGACAATGTTTACACTCTTGAGATGTGCATGACTGGCCTGGATAGAGAGAAAGCACAGGTTTTCTACAAAGAACAATCTGCTTCAGCTGCCATGATGACTGTTAATTCCGGCATTAGAAAAATTCTTCCAGATTCCGAGATTTGTGACTTTGACTTTGAACCATGTGGTTATTCAATGAACTCTGTTGAAGGCGCTGCTGTTTCTACGATTCATGTTACCCCAGAAGATGGTTTCAGTTATGCAAGCTTCGAAACTGTTGGTTATGACTTCAAAGCGGTGAATCTGAACGAAATGGTTCAGAGGGTATTGGCATGTTTCCTCCCAACTGAGTTTTCTGTTGCAGTTCATGTGGATGGTGCAAGCAAGTCGTTTGAGCAGACCTGCTTTCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCACGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAATTCGGGAAGACTAGTGACTGTGGTTCACCTAGATCAACTCTAAAGTGCTGGAATGAGGAAGATGAGGAAGAGTAGTTTCCTTAAGTGTCTTTATTATTCTGTCCTTGTGAAAATAAGTCTGGTTTTCCAGATACGTTATTGTTTTTCTTTGTTGTCTTTTTTAGCTTCTGTTAGAGACCATTTGGGCATTTAGACCTTTATTGTTTCTATTACCATTTGAACATCGAATGGATTAATAAATCACTTTGTTTGCGTGCAAAATTTGTTTAAATGTTTGCCTCCTTCCGCTGTGTTTGCTATTTCAATCGTCTTTTGTTCCTCAGACCAATTGACGTGCTTTACTTTTTTGTAAAGCAAAAACAAGTTTTGTGTTTCTTATGTTTTAATGTAAA

Coding sequences of Glyma.02g128000

Limit To All Plant Sequences

>Glyma.02g128000.1 sequence-type=CDS polypeptide=Glyma.02g128000.1.p locus=Glyma.02g128000 ID=Glyma.02g128000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCATGGCGGTTTCCGCAATTGGTTTTGAAGGTTTCGAGAAAAGGTTGGAAATATCCTTTTTCCAGCCGGGACTTTTTGCTGACCCTGAAGGAAGGGGTCTAAGGGCTCTTACAAAATCCCAGTTGGGTGAGATTCTAACACCAGCTGCTTGCACCATTGTTTCTTCGCTCAAAAACGATAATGTCGACTCCTATGTTCTATCTGAGTCCAGCCTCTTTGTTTATGCCTACAAGATCATCATCAAAACCTGTGGTACTACTAAGCTATTGCTTGCAATCCCACCCATATTGAAGTTCGCTGAAATGCTTTCCCTTAATGTTAAGTCTGTGAATTACACCAGGGGAAGTTTCATTTTCCCCAGTGCTCAGCCATATCCCCATCGCAACTTTTCTGAGGAAGTTGCTATTCTTGATGGCTACTTTGGCAAACTTGGTGCAGGAAGCAATGCTTATATTTTGGGTGGCCAAGACAAAGCACAGAACTGGCATGTCTACTCTGCTTCTGCAGATTCTGTAACTCAATGTGACAATGTTTACACTCTTGAGATGTGCATGACTGGCCTGGATAGAGAGAAAGCACAGGTTTTCTACAAAGAACAATCTGCTTCAGCTGCCATGATGACTGTTAATTCCGGCATTAGAAAAATTCTTCCAGATTCCGAGATTTGTGACTTTGACTTTGAACCATGTGGTTATTCAATGAACTCTGTTGAAGGCGCTGCTGTTTCTACGATTCATGTTACCCCAGAAGATGGTTTCAGTTATGCAAGCTTCGAAACTGTTGGTTATGACTTCAAAGCGGTGAATCTGAACGAAATGGTTCAGAGGGTATTGGCATGTTTCCTCCCAACTGAGTTTTCTGTTGCAGTTCATGTGGATGGTGCAAGCAAGTCGTTTGAGCAGACCTGCTTTCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCACGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAATTCGGGAAGACTAGTGACTGTGGTTCACCTAGATCAACTCTAAAGTGCTGGAATGAGGAAGATGAGGAAGAGTAG

>Glyma.02g128000.2 sequence-type=CDS polypeptide=Glyma.02g128000.2.p locus=Glyma.02g128000 ID=Glyma.02g128000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTTCCGCAATTGGTTTTGAAGGTTTCGAGAAAAGGTTGGAAATATCCTTTTTCCAGCCGGGACTTTTTGCTGACCCTGAAGGAAGGGGTCTAAGGGCTCTTACAAAATCCCAGTTGGGTGAGATTCTAACACCAGCTGCTTGCACCATTGTTTCTTCGCTCAAAAACGATAATGTCGACTCCTATGTTCTATCTGAGTCCAGCCTCTTTGTTTATGCCTACAAGATCATCATCAAAACCTGTGGTACTACTAAGCTATTGCTTGCAATCCCACCCATATTGAAGTTCGCTGAAATGCTTTCCCTTAATGTTAAGTCTGTGAATTACACCAGGGGAAGTTTCATTTTCCCCAGTGCTCAGCCATATCCCCATCGCAACTTTTCTGAGGAAGTTGCTATTCTTGATGGCTACTTTGGCAAACTTGGTGCAGGAAGCAATGCTTATATTTTGGGTGGCCAAGACAAAGCACAGAACTGGCATGTCTACTCTGCTTCTGCAGATTCTGTAACTCAATGTGACAATGTTTACACTCTTGAGATGTGCATGACTGGCCTGGATAGAGAGAAAGCACAGGTTTTCTACAAAGAACAATCTGCTTCAGCTGCCATGATGACTGTTAATTCCGGCATTAGAAAAATTCTTCCAGATTCCGAGATTTGTGACTTTGACTTTGAACCATGTGGTTATTCAATGAACTCTGTTGAAGGCGCTGCTGTTTCTACGATTCATGTTACCCCAGAAGATGGTTTCAGTTATGCAAGCTTCGAAACTGTTGGTTATGACTTCAAAGCGGTGAATCTGAACGAAATGGTTCAGAGGGTATTGGCATGTTTCCTCCCAACTGAGTTTTCTGTTGCAGTTCATGTGGATGGTGCAAGCAAGTCGTTTGAGCAGACCTGCTTTCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCACGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAATTCGGGAAGACTAGTGACTGTGGTTCACCTAGATCAACTCTAAAGTGCTGGAATGAGGAAGATGAGGAAGAGTAG

Predicted protein sequences of Glyma.02g128000

Limit To All Plant Sequences

>Glyma.02g128000.1.p sequence-type=predicted peptide transcript=Glyma.02g128000.1 locus=Glyma.02g128000 ID=Glyma.02g128000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMAVSAIGFEGFEKRLEISFFQPGLFADPEGRGLRALTKSQLGEILTPAACTIVSSLKNDNVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFAEMLSLNVKSVNYTRGSFIFPSAQPYPHRNFSEEVAILDGYFGKLGAGSNAYILGGQDKAQNWHVYSASADSVTQCDNVYTLEMCMTGLDREKAQVFYKEQSASAAMMTVNSGIRKILPDSEICDFDFEPCGYSMNSVEGAAVSTIHVTPEDGFSYASFETVGYDFKAVNLNEMVQRVLACFLPTEFSVAVHVDGASKSFEQTCFLDVKGYCREERSHEGLGMGGSVVYQKFGKTSDCGSPRSTLKCWNEEDEEE*

>Glyma.02g128000.2.p sequence-type=predicted peptide transcript=Glyma.02g128000.2 locus=Glyma.02g128000 ID=Glyma.02g128000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVSAIGFEGFEKRLEISFFQPGLFADPEGRGLRALTKSQLGEILTPAACTIVSSLKNDNVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKFAEMLSLNVKSVNYTRGSFIFPSAQPYPHRNFSEEVAILDGYFGKLGAGSNAYILGGQDKAQNWHVYSASADSVTQCDNVYTLEMCMTGLDREKAQVFYKEQSASAAMMTVNSGIRKILPDSEICDFDFEPCGYSMNSVEGAAVSTIHVTPEDGFSYASFETVGYDFKAVNLNEMVQRVLACFLPTEFSVAVHVDGASKSFEQTCFLDVKGYCREERSHEGLGMGGSVVYQKFGKTSDCGSPRSTLKCWNEEDEEE*

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