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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69220.1 | AT | Protein kinase superfamily protein | JGI | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0006468 | GO-bp | protein phosphorylation | JGI | N/A | IEA |
| GO:0007266 | GO-bp | Rho protein signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0007346 | GO-bp | regulation of mitotic cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0016477 | GO-bp | cell migration | EnsemblGenomes | N/A | IEA |
| GO:0023014 | GO-bp | signal transduction by protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0030036 | GO-bp | actin cytoskeleton organization | EnsemblGenomes | N/A | IEA |
| GO:0031098 | GO-bp | stress-activated protein kinase signaling cascade | EnsemblGenomes | N/A | IEA |
| GO:0032147 | GO-bp | activation of protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0043408 | GO-bp | regulation of MAPK cascade | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0004672 | GO-mf | protein kinase activity | JGI | N/A | IEA |
| GO:0004674 | GO-mf | protein serine/threonine kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0048365 | GO-mf | Rac GTPase binding | EnsemblGenomes | N/A | IEA |
| KOG0576 | KOG | Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family | JGI | N/A | IEA |
| PTHR24361 | Panther | MITOGEN-ACTIVATED KINASE KINASE KINASE | JGI | N/A | IEA |
| PTHR24361:SF93 | Panther | STE20-RELATED KINASE ADAPTER PROTEIN BETA | JGI | N/A | IEA |
| PF00069 | PFAM | Protein kinase domain | JGI | N/A | IEA |
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Glyma.02g119700 not represented in the dataset |
Glyma.02g119700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.01g061500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g13220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g119700.1 sequence-type=CDS polypeptide=Glyma.02g119700.1.p locus=Glyma.02g119700 ID=Glyma.02g119700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATCGGAGCTCTTTCTCACCGGGAACCGGAAAAACCCGAACCAAACCGGACATATACTCTACCTTCGTGGTCCACGACGACGAAGACGATGACGGAGGAGGAACCTTCCGGCGCCGGAAATCCGGCGGCGGCGCGCAGCCACAGGACGATCCGTACGCGACAATGGTGTTCAAAGACAACGGCCACGACGACGAGGACGACGAAGACTCCTCTCTTCCTCCGCTCCTCAAGCGCCTCCCCAAGGACTTCGGCGGCGGAGCGCCGCTGGACTACGACGACGAAGACGATGACGCCGGCGACTTCGGCACAATGATCGTGAAGTCCGACCGGAGCCGGCAGCGCGACCGGCCTTCTTCCGGCGTGGCTTCGCCAGCGTGGAAGGCTCGGAGTCCTCTGAACAGATTCGGTGGCGGCGATGACGACGGCGATGACGACGACGACGACGGAGGAGGATTCTCGACGTTCGTAGTGCGATCAACGGTGAAGTCCGGCGAGAGAGAGTCGGTGAGCGGAACCGTGGTTCGACGGACCAGTGGCGGCGGCAGCGTCGGTGTCGGTGTCGGTGTCGGTTCGACGATGGAGAGAGCGGTGGCGAGCATGCAAGGGATGGGAGAGTTCGGATTCGGAAAGCAGAGGAAGGGAAGTGGATCTTCGCAGAACGATGAAGGAAGGCATCAATCGATAACGACGAAGGTTTCGACGAGTTCGATCCCTGATAGTGTTACCAGAGAGGACCCTACGACCAAATACGAATTGCTCAATGAACTTGGGAAGGGGTCTTATGGAGCTGTTTACAAAGCAAGGGACTTGAGAACCTCGGAGATGGTTGCTATCAAAGTAATATCGTTATCTGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAAATGTTACAACAATGTAATCATCCAAATGTTGTCCGTTATCTTGCAAGCTATCAGGGAGAAGAGTATCTTTGGATAGTGATGGAGTATTGCGGTGGTGGTAGTGTTGCTGATTTGATGAGCGTGACTGACGAGCCACTTGATGAGGGTCAAATAGCATATATCTGTAGAGAGGCACTGAAGGGTCTTGATTATTTGCACTCAATTTTTAAAGTCCATAGAGACATTAAAGGTGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCACAGCTTACAAGGACTATGTCAAAGCGCAATACGTTCATTGGAACCCCTCATTGGATGGCTCCAGAAGTTATTCAGGAAAGTCGCTATGATGGAAAGGTAGATGTTTGGGCTCTTGGTGTGTCTGCTATTGAAATGGCTGAGGGTGTTCCTCCAAGATCATCAGTACATCCAATGAGGGTTTTATTCATGATATCAATCGAACCAGCTCCAATGCTTGAGGATAAAGAAAAATGGTCTCTATATTTCCATGATTTTGTTGCCAAGTGCCTAACAAAAGAACCACGTCTCCGCCCTACTGCTTCTGAGATGTTGAAGCACAAATTCTTTGAAAAGTGGAAAAGTGGATCTGCTGCAATGTTGCCAAAACTAGAAAAGGCGAGGCAAATCAGGGCTTCAATGGCTTTGCAGGCACAAGCTCTTCCAGCTGCATCAGAAGATCAGGAGTTAGATTCAAAACTAAATGATGAATATGGAGGTACTGTTCCATCCAGACCTCATAACATCGGTGTTGAGGGGGCTGCTGATCTCTCTTCACATGGCACTACAAGGAAGCTACATAAAGTGGAAGATGTAGACACGAGTGAAGGCAACTTTGGCACTGTTATAATCCATGGAGATGAATTACATAAGACCACACAAGATGCAGATTCTGCAGCTTCTGTATCTGCTCTGACCAGTGGCTCAGGAGACAGATTGGCTGACTCTGGGATTGAGAGTCAGAAAGTTGGTATTATGAACACTGCCTCTTTTAGAGGATATAGTGCTACTACCAATACTGTTCAATCGTCTTTACCTTATGTTAGTAATTCAACTGAGCAGAGCCTCAAAACTAGAGGTACTCATCGAGCACAAGCTGGAATTGGTGGTGATATAAGCAATAGCATATTCAAGAATGAAACAGTCAGCCGTAAAGCATTTGCTTTACAAGATAAGCTTTGGTCCATTTATGCTGCTGGTAATACAGTGCCCATCCCGTTCTTAAGGGCAACAGATATATCACCAATTGCTCTCCTGTCAGACAATGTACTTGGTGGCATACAACAGGATACTGGTGGAACTGGAACAGTGGAAGCATTGCAAGAGCTTTTTAGTGGTGACGGACAGTCCAAAAAGGGCCGGAGAGGACTAAATGAGATGCCTCTTCCTCCAAGCATTTACCAAAGATTGACATCAAGTTCTACTCTAATGAATTTGGCGCAGGCTTTAGCTTACCATAAAATGTGTTACGAAGATATGCCGCTGCAGGAGCTGCAAGCGACCCAGGAGCAGCGGACTATTCAAAATCTATCTGACACCCTTCGAACCATTCTTCGGTTGTAG
>Glyma.02g119700.1.p sequence-type=predicted peptide transcript=Glyma.02g119700.1 locus=Glyma.02g119700 ID=Glyma.02g119700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDRSSFSPGTGKTRTKPDIYSTFVVHDDEDDDGGGTFRRRKSGGGAQPQDDPYATMVFKDNGHDDEDDEDSSLPPLLKRLPKDFGGGAPLDYDDEDDDAGDFGTMIVKSDRSRQRDRPSSGVASPAWKARSPLNRFGGGDDDGDDDDDDGGGFSTFVVRSTVKSGERESVSGTVVRRTSGGGSVGVGVGVGSTMERAVASMQGMGEFGFGKQRKGSGSSQNDEGRHQSITTKVSTSSIPDSVTREDPTTKYELLNELGKGSYGAVYKARDLRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLASYQGEEYLWIVMEYCGGGSVADLMSVTDEPLDEGQIAYICREALKGLDYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPTASEMLKHKFFEKWKSGSAAMLPKLEKARQIRASMALQAQALPAASEDQELDSKLNDEYGGTVPSRPHNIGVEGAADLSSHGTTRKLHKVEDVDTSEGNFGTVIIHGDELHKTTQDADSAASVSALTSGSGDRLADSGIESQKVGIMNTASFRGYSATTNTVQSSLPYVSNSTEQSLKTRGTHRAQAGIGGDISNSIFKNETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGIQQDTGGTGTVEALQELFSGDGQSKKGRRGLNEMPLPPSIYQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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