Glyma.02g118600

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Report for Sequence Feature Glyma.02g118600

Feature Type:	gene_model
Chromosome:	Gm02
Start:	11691012
stop:	11694189
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g118600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22070.1	AT	pentatricopeptide (PPR) repeat-containing protein	JGI	N/A	IEA
GO:0009451	GO-bp	RNA modification	EnsemblGenomes	N/A	IEA
GO:0090305	GO-bp	nucleic acid phosphodiester bond hydrolysis	EnsemblGenomes	N/A	IEA
GO:0043231	GO-cc	intracellular membrane-bounded organelle	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0004519	GO-mf	endonuclease activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
PTHR24015	Panther	FAMILY NOT NAMED	JGI	N/A	IEA
PTHR24015:SF95	Panther	SUBFAMILY NOT NAMED	JGI	N/A	IEA
PF01535	PFAM	PPR repeat	JGI	N/A	IEA

Proteins Associated with Glyma.02g118600

Locus	Gene Symbol	Protein Name
	PPR13	Psudo-Response Regulator gene 13

Expression Patterns of Glyma.02g118600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g118600

Paralog	Evidence	Comments
Glyma.01g060400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g118600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g13130	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g118600

Limit To All Plant Sequences

>Glyma.02g118600.2 sequence-type=transcript locus=Glyma.02g118600 ID=Glyma.02g118600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTACGACTACGAGATTACAACAGAGTGAACAGACACTGCACCGTGCTTGTGTTGATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTTGATTTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAGAAGAAACAGGTGGATTTCATGTCTTAAAGGGAATGAGTGGAAGAATGATTGAGTCAATCAAGCTTGCAGGAAAGTTGCTCTACAACAATCGTAAGAGCATTTCGAGGAGCATtgttacaatcaaagactcaacccgaagcaacacagagcatggtgagcaagaaataggaccaaacacagaaacaactcaggaagcagaattcaagctagaaacagggtcgagcaaggaaaaagcttcaaggccaaaaagggaaattgttaaacctcaatacctcaaggattttgtggaaaaatagtagctggcaagagtggtgctcagcaattgcagcaacgtagcaattccccctttgtctgctgaggtggcaccagtccattaggaagcatattccttttgtttttgtttttttctccaaggcaatatgccacaagaatccattagaattgttagtagcagaaaacgagtctatataaagcagggcaatgtatctaattgataagcaataatacaagaattttcccatttctccctttaa

Coding sequences of Glyma.02g118600

Limit To All Plant Sequences

>Glyma.02g118600.1 sequence-type=CDS polypeptide=Glyma.02g118600.1.p locus=Glyma.02g118600 ID=Glyma.02g118600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTTGATTTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAG

>Glyma.02g118600.2 sequence-type=CDS polypeptide=Glyma.02g118600.2.p locus=Glyma.02g118600 ID=Glyma.02g118600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTAACACCAACCCCAAACCCTCCCTCCCATTCCGATGCATGCGTGCACCTTCTCCAATCTGCAATCAAATCACGAGACCCATTCATCGGAAGATGCATTCACGCTCGAATCATCAAACACGGCCTTCGCTACCTCGGCGTCTTCCTCACAAACAACCTCCTCAACCTCTACGTCAAAACCGGCTCCTCCTCTGACGCCCATCGCCTGTTCGATGAAATGCCCCTTAAGACCACCTTCTCATGGAACACCATTCTCTCCGCGCATGCCAAGGCTGGCAACTTGGACTCCGCGCGCCGAGTGTTTGATGAAATTCCCCAACCAGATTCTGTGTCCTGGACCACCATGATAGTGGGGTATAACCACTTGGGTCTTTTCAAAAGCGCTGTTCACGCGTTTCTCCGAATGGTTTCCTCTGGAATTTCGCCGACCCAGTTCACGTTTACCAATGTTCTTGCCTCATGTGCTGCAGCTCAGGCTCTGGATGTTGGAAAGAAGGTTCATTCCTTTGTCGTAAAACTGGGGCAATCCGGGGTTGTTCCCGTGGCAAACTCACTGCTTAACATGTATGCAAAGTGTGGTGATTCTGTTATGGCAAAGGTTGTTTTTGACCGGATGAGGCTGAAGGATACATCTACTTGGAATACTATGATTTCTATGCATATGCAGTTTTGTCAATTTGACCTTGCACTTGCACTCTTTGATCAAATGACTGACCCGGATATTGTCTCTTGGAATTCCATCATCACTGGGTACTGTCATCAGGGATATGACATCAGAGCCTTGGAAACATTTTCTTTTATGCTTAAGAGTTCGTCTTTGAAGCCAGATAAGTTCACCTTGGGAAGTGTTCTGTCAGCTTGTGCCAATCGGGAAAGCTTGAAACTTGGGAAACAAATCCATGCACATATTGTAAGAGCCGATGTTGACATCGCTGGGGCAGTGGGGAATGCCCTGATCTCAATGTATGCGAAATCGGGTGCTGTTGAAGTTGCTCATAGGATTGTAGAAATAACCGGTACTCCAAGTCTTAATGTTATAGCATTCACGTCACTGTTGGATGGCTATTTCAAAATTGGGGATATAGACCCTGCAAGAGCCATATTTGATTCATTGAAGCACCGTGATGTAGTTGCCTGGACTGCCATGATTGTTGGTTATGCACAGAATGGCTTAATTAGTGATGCTTTGGTGCTGTTTAGGTTAATGATTAGAGAAGGTCCAAAGCCAAACAACTATACCCTGGCAGCGGTATTAAGTGTCATTTCAAGTTTGGCTTCTCTGGATCACGGTAAGCAGCTTCATGCAGTTGCCATAAGATTGGAAGAAGTATCATCAGTTTCTGTGGGTAATGCTTTGATTACCATGTACTCAAGATCTGGTAGCATCAAAGATGCTAGAAAAATATTCAATCACATATGCTCCTACAGGGATACATTGACTTGGACTTCCATGATTTTATCTCTAGCTCAACATGGTCTTGGAAATGAGGCCATAGAACTGTTTGAAAAGATGCTGAGAATTAACCTAAAGCCTGATCACATTACTTATGTTGGTGTGTTGTCTGCTTGCACGCATGTGGGATTGGTAGAACAGGGTAAAAGTTACTTTAATTTGATGAAAAATGTTCATAACATTGAACCCACTTCTAGCCACTATGCATGCATGATTGACCTGCTTGGACGTGCTGGATTGCTTGAAGAAGCATATAATTTTATTAGAAATATGCCTATTGAACCAGATGTTGTAGCTTGGGGTTCGCTTTTGTCTTCGTGTAGGGTTCATAAATATGTTGATTTGGCTAAAGTGGCTGCTGAAAAATTGCTTCTTATTGATCCTAATAATAGTGGGGCTTACTTAGCGCTTGCTAATACACTTTCAGCCTGTGGTAAATGGGAGGATGCTGCTAAGGTTAGGAAGTCAATGAAGGACAAAGCAGTAAAGAAAGAACAAGGATTCAGTTGGGTTCAAATCAAGAACAAAGTCCATATTTTTGGGGTTGAGGATGCTCTTCACCCGCAAAGAGATGCAATCTACTGTATGATTTCCAAAATATGGAAGGAGATAAAGAAAATGGGCTTTATTCCTGACACCAATTCTGTATTGCATGACCTAGAGCAAGAAGTGAAAGAACAGATCCTTAGACATCATAGTGAAAAACTCGCCATTGCATTTGCATTAATAAATACACCAAAGCATACTACAGTGAGGATCATGAAGAACCTTAGAGTCTGTAATGACTGTCATTCTGCCATAAGATATATCTCTTTGCTTGTGGAAAGAGAAATTATAGTAAGAGATGCAACGCGTTTTCATCATTTTAAGGATGGTTCTTGCTCCTGTCAGGATTACTGGTAG

Predicted protein sequences of Glyma.02g118600

Limit To All Plant Sequences

>Glyma.02g118600.1.p sequence-type=predicted peptide transcript=Glyma.02g118600.1 locus=Glyma.02g118600 ID=Glyma.02g118600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW*

>Glyma.02g118600.2.p sequence-type=predicted peptide transcript=Glyma.02g118600.2 locus=Glyma.02g118600 ID=Glyma.02g118600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW*

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