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Report for Sequence Feature Glyma.02g112400

Feature Type:gene_model
Chromosome:Gm02
Start:10905625
stop:10907687
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g112400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G13950.1AT eukaryotic elongation factor 5A-1 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006452GO-bp translational frameshifting EnsemblGenomesN/AIEA
GO:0006452GO-bp translational frameshifting JGI N/AIEA
GO:0045901GO-bp positive regulation of translational elongation EnsemblGenomesN/AIEA
GO:0045901GO-bp positive regulation of translational elongation JGI N/AIEA
GO:0045905GO-bp positive regulation of translational termination EnsemblGenomesN/AIEA
GO:0045905GO-bp positive regulation of translational termination JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity EnsemblGenomesN/AIEA
GO:0003746GO-mf translation elongation factor activity JGI N/AIEA
GO:0043022GO-mf ribosome binding EnsemblGenomesN/AIEA
GO:0043022GO-mf ribosome binding JGI N/AIEA
KOG3271 KOG Translation initiation factor 5A (eIF-5A) JGI N/AIEA
PTHR11673Panther TRANSLATION INITIATION FACTOR 5A-RELATED JGI N/AIEA
PF00467PFAM KOW motif JGI N/AIEA
PF01287PFAM Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold JGI N/AIEA

Proteins Associated with Glyma.02g112400
LocusGene SymbolProtein Name
EIF5A eukaryotic translation initiation factor 5A

Expression Patterns of Glyma.02g112400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g112400
ParalogEvidenceComments
Glyma.01g054000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g112400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g12520 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g112400
>Glyma.02g112400.2 sequence-type=transcript locus=Glyma.02g112400 ID=Glyma.02g112400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCAGAAGCATCACACATTATGTTGCGTGTGATGAACCATAACCATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAAGCTACATCTATGAGATATTGATACCCCTAAGTGATTTGATGTGATATAACTAAGGTTATTTAGGCAAGATAAATAGTTATTTGCACTATTTTCTTTGATTGCATCTTTGGATTATTATGTTTTATGTTCAATTTTTTTGTTTTTTTCTTGGTTGGGGGAGGTTGATAGAATTTTATAAAAAAATCTGAATCTAACAAGTTAATGAATCTGTAGTTAAAATAA
Coding sequences of Glyma.02g112400
>Glyma.02g112400.1 sequence-type=CDS polypeptide=Glyma.02g112400.1.p locus=Glyma.02g112400 ID=Glyma.02g112400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGGCTTCCAACCGATGAAAATCTGCTTTCGCAGATCAAGGATGGATTTGCTGAGGGCAAAGATCTGGTTGTGTCTGTTATGTCTTCCATGGGGGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA

>Glyma.02g112400.2 sequence-type=CDS polypeptide=Glyma.02g112400.2.p locus=Glyma.02g112400 ID=Glyma.02g112400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCAGACGAGGAGCACCACTTCGAGTCAAAGGCTGATGCTGGAGCATCAAAGACATTTCCCCAGCAAGCTGGAACCATCCGCAAAAACGGTTACATTGTCATCAAGAACAGGCCATGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACACGCAAAGTGTCACTTTGTTGCAATTGACATCTTCACTGGGAAAAAGCTTGAGGATATTGTCCCATCTTCCCATAACTGTGATGTTCCCCATGTTAATCGCATTGACTACCAGCTCATTGACATCTCAGAGGATGGATTTGTAAGATTTCAGTTGCACTTGTGTCCCTTATTCATTCCCCTTTTCTTTTAA
Predicted protein sequences of Glyma.02g112400
>Glyma.02g112400.1.p sequence-type=predicted peptide transcript=Glyma.02g112400.1 locus=Glyma.02g112400 ID=Glyma.02g112400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSSMGEEQICALKDIGPK*

>Glyma.02g112400.2.p sequence-type=predicted peptide transcript=Glyma.02g112400.2 locus=Glyma.02g112400 ID=Glyma.02g112400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRIDYQLIDISEDGFVRFQLHLCPLFIPLFF*






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