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Report for Sequence Feature Glyma.02g111700

Feature Type:gene_model
Chromosome:Gm02
Start:10799324
stop:10804282
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g111700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26660.1AT Prefoldin chaperone subunit family protein JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex EnsemblGenomesN/AIEA
GO:0016272GO-cc prefoldin complex JGI N/AIEA
GO:0051082GO-mf unfolded protein binding EnsemblGenomesN/AIEA
GO:0051082GO-mf unfolded protein binding JGI N/AIEA
KOG3047 KOG Predicted transcriptional regulator UXT JGI N/AIEA
PTHR13345Panther NUT2 AND UXT JGI N/AIEA
PTHR13345:SF3Panther PROTEIN UXT JGI N/AIEA
PF02996PFAM Prefoldin subunit JGI N/AIEA

Expression Patterns of Glyma.02g111700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g111700 not represented in the dataset
Glyma.02g111700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g111700
ParalogEvidenceComments
Glyma.01g053200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g111700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g12450 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g111700
>Glyma.02g111700.2 sequence-type=transcript locus=Glyma.02g111700 ID=Glyma.02g111700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTGACTCATCGGGCTTTGTCTCTCCAACCCGAAAAGTAGGAGTCAGAGAACGAAACGGCACTGTTGAGGTGAAGTCCAATTTCGTAGCTCTTGCGTTTAGCAAAAACGGTGTCGTGCGGAGAAAGAGGCTGCGTTTAAAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGATAATTACTGAAGAAATGCATGTGAGCAGACCAGAGATTGATGTTTATCTAGGGCGAAAGATTGCATCTCTTTCTCTGACCTTATATCAAAGTACATGAAGATATATTGAACGTCGTTATGTTGTCTTGTTAACCTTTTTGTTATGGTGTCCTGTGTTTGGTCTTGTGGCACTGTGATGCCTCAAGGTTTATTTTTGTTAGCCATTATGTTTAAACTCGATGGTTATGGGAAATCATTTGAAGAATGGCTAGTTTAGTTTTGCATTCAAATAATTTGAGAAAAACATAGCTAATGTATTCGCATAAATGCTAGCGGAAAGTTTGATAATGGAAGATGGCAGTTGCTTCCTGC

>Glyma.02g111700.3 sequence-type=transcript locus=Glyma.02g111700 ID=Glyma.02g111700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGAATTTTAAAATAAAAAATATGCTAAAAGAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGATAATTACTGAAGAAATGCATGTGAGCAGACCAGAGATTGATGTTTATCTAGGGCGAAAGATTGCATCTCTTTCTCTGACCTTATATCAAAGTACATGAAGATATATTGAACGTCGTTATGTTGTCTTGTTAACCTTTTTGTTATGGTGTCCTGTGTTTGGTCTTGTGGCACTGTGATGCCTCAAGGTTTATTTTTGTTAGCCATTATGTTTAAACTCGATGGTTATGGGAAATCATTTGAAGAATGGCTAGTTTAGTTTTGCATTCAAATAATTTGAGAAAAACATAGCTAATGTATTCGCATAAATGCTAGCGGAAAGTTTGATAATGGAAGATGGCAGTTGCTTCCTGC

>Glyma.02g111700.4 sequence-type=transcript locus=Glyma.02g111700 ID=Glyma.02g111700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTGACTCATCGGGCTTTGTCTCTCCAACCCGAAAAGTAGGAGTCAGAGAACGAAACGGCACTGTTGAGGTGAAGTCCAATTTCGTAGCTCTTGCGTTTAGCAAAAACGGTGTCGTGCGGAGAAAGAGGCTGCGTTTAAAGATTGCAGATTAGAGAAAACGCTGCTCACTCACTGCAGCTCCCTTGTTCACGTGGACCGGAGGGCGACAAACGCACGACGGAGGGTGACGGACGCGGTCTTTTCCGGCACGGTCTCTCTTCAGTCTTCGCTCTCCCTTTTCCGGCACGGCCCGAGGCGGTCTCACTTCTCTCACCCTTTTGCGACGAGGTCACCACTGTTTCTGTGTTTTCCGGCGAGGACTCTCATCATATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGTTGGCATGTGAGTTAACACTTCACAAGTTTCAAATACATAGAAAGGGCATATAGTTTGGAAGGCTTGGCTAACATTCCAAAAATCTGTGCTCAAGCATTTTGGCTAATATGGTGTTAGTTCATCAATTCT
Coding sequences of Glyma.02g111700
>Glyma.02g111700.1 sequence-type=CDS polypeptide=Glyma.02g111700.1.p locus=Glyma.02g111700 ID=Glyma.02g111700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma.02g111700.2 sequence-type=CDS polypeptide=Glyma.02g111700.2.p locus=Glyma.02g111700 ID=Glyma.02g111700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma.02g111700.3 sequence-type=CDS polypeptide=Glyma.02g111700.3.p locus=Glyma.02g111700 ID=Glyma.02g111700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGCAGATAGAGGAGTACACCCAGTTGATTGCATCTATTAAAGCTCAGATTAAGCTTGTTTGTGAAGGGATTCGAGAATTACTGCAACTTCCAGCTGAGAAATCCCTACCAGAACGGATATTTTGA

>Glyma.02g111700.4 sequence-type=CDS polypeptide=Glyma.02g111700.4.p locus=Glyma.02g111700 ID=Glyma.02g111700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACAACTTACGTCAGGAGAAAGTTCAAAGATTTGAAGAATTTGTTGACAAACGCCTGAAACCTGATCTTGTTCATGCTATTGCTCAGCGGGACAAGGTATTTGAACAACAGAAAATTTTTGCTGATTTGGGAAAAAACATTGAAAACCTAGAGAAGAATAGTGTAACCAGTCTTAGAACTTTGGTCAATCTTGGGTCTGAAGTATACCTGCAGGCAGAAGTGCCAGATACACAACACATATTTGTGGATGTAGGATTTGGATTCCATGTGGAGTTTACTTGGTCAGAAGCTCTGAACTACATAGAAAAAAGGGAAGAAAAGATAGCCAGGTTGGCATGTGAGTTAACACTTCACAAGTTTCAAATACATAGAAAGGGCATATAG
Predicted protein sequences of Glyma.02g111700
>Glyma.02g111700.1.p sequence-type=predicted peptide transcript=Glyma.02g111700.1 locus=Glyma.02g111700 ID=Glyma.02g111700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRDKVFEQQKIFADLGKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma.02g111700.2.p sequence-type=predicted peptide transcript=Glyma.02g111700.2 locus=Glyma.02g111700 ID=Glyma.02g111700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma.02g111700.3.p sequence-type=predicted peptide transcript=Glyma.02g111700.3 locus=Glyma.02g111700 ID=Glyma.02g111700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRDKVFEQQKIFADLGKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARQIEEYTQLIASIKAQIKLVCEGIRELLQLPAEKSLPERIF*

>Glyma.02g111700.4.p sequence-type=predicted peptide transcript=Glyma.02g111700.4 locus=Glyma.02g111700 ID=Glyma.02g111700.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDNLRQEKVQRFEEFVDKRLKPDLVHAIAQRDKVFEQQKIFADLGKNIENLEKNSVTSLRTLVNLGSEVYLQAEVPDTQHIFVDVGFGFHVEFTWSEALNYIEKREEKIARLACELTLHKFQIHRKGI*






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