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Report for Sequence Feature Glyma.02g102900

Feature Type:gene_model
Chromosome:Gm02
Start:9762548
stop:9766635
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g102900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49780.1AT plant U-box 26 JGI N/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination JGI N/AIEA
GO:0000151GO-cc ubiquitin ligase complex JGI N/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein ligase activity JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
PTHR22849Panther WDSAM1 PROTEIN JGI N/AIEA
PF04564PFAM U-box domain JGI N/AIEA

Expression Patterns of Glyma.02g102900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g102900
ParalogEvidenceComments
Glyma.07g214300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g102900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g11480 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g102900
>Glyma.02g102900.2 sequence-type=transcript locus=Glyma.02g102900 ID=Glyma.02g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCACACGTGTGGGAGGAGTCAGATAAGGGGCAGAGAGAGGGGCGGTGGCAGGCCCAGTCCCCTCTCTGTGCCTGTTGGGTATGTTCCTCTGTTCCATCTCATATATAAGAGAAAGCAAAGCGTGACATAGCTAAAGAGAATTTGCAGAGCCTTCAGATTTAGCTACCTCTATTATTATTATTACTCATTACTCATTTCTCGTACCAaacacaacacaacacaacacatcacaCTCTTCTCTCTTCTCTTCTTTCTTATCCCATTACAATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGACCGTTTTTTAATTTTTCTCCTCCAGTAATAATTATAGTGGAAAAAAATGTTTAGATTTCGAGAAAAAGAAAGCTTAATTAGAGAGTCTTTTTTGTTTGTTTAGATTGGTAAATAAATAGGTCTGTAATGTAATTCTGTATTTAATTATTTTTCTTTCTTCTCTTTGTTTTTGTATGTAACGATTATTGTGAAGAACGAAAGCAAGCAAAAATGTTTCATCAGGGAGTTGTAATTTTTGTAAGATGGAAAAGAAAAATCAAAATAGAGAGAAAGTGTATCAAAAAAACAATATTGACAGAACAGAACACGATAAAAAAAATATGTGAAAGTGAAACTACAGTTGCTGCTGCATTCCAATGGAAGGGCTATCTGTATGGGCCATAACTATCAACTTGTAGCCGAATAGCGTACTGGTCTATGACTACGAAGTTTGAGCAAGAACAAAACAGAGAGAACAGAAGGGGTTGCACGGATTTGAAACGTCTTTGAATGAAAAGGAAAAGAGTGTGCACATGTGAGGGAACATGGTGGGCCCCAGAGGGTCCTACTACAAGGAGTGGGAAAAAATGATTTATGTGGCTTACAGATACACTTTTTTTTTTTATAACGAAAAATTTAGGTATGCTGCATTTTGAGAGATTCA

>Glyma.02g102900.3 sequence-type=transcript locus=Glyma.02g102900 ID=Glyma.02g102900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCACACGTGTGGGAGGAGTCAGATAAGGGGCAGAGAGAGGGGCGGTGGCAGGCCCAGTCCCCTCTCTGTGCCTGTTGGGTATGTTCCTCTGTTCCATCTCATATATAAGAGAAAGCAAAGCGTGACATAGCTAAAGAGAATTTGCAGAGCCTTCAGATTTAGCTACCTCTATTATTATTATTACTCATTACTCATTTCTCGTACCAaacacaacacaacacaacacatcacaCTCTTCTCTCTTCTCTTCTTTCTTATCCCATTACAATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGACCGTTTTTTAATTTTTCTCCTCCAGTAATAATTATAGTGGAAAAAAATGTTTAGATTTCGAGAAAAAGAAAGCTTAATTAGAGAGTCTTTTTTGTTTGTTTAGATTGGTAAATAAATAGGTCTGTAATGTAATTCTGTATTTAATTATTTTTCTTTCTTCTCTTTGTTTTTGTATGTAACGATTATTGTGAAGAACGAAAGCAAGCAAAAATGTTTCATCAGGGAGTTGTAATTTTTGTAAGATGGAAAAGAAAAATCAAAATAGAGGTAACTTTTGTTTTGTTTCAACTTTCGAGTAATGTGGTAGTTTGTGTTTAGGAACGTAATTAT
Coding sequences of Glyma.02g102900
>Glyma.02g102900.1 sequence-type=CDS polypeptide=Glyma.02g102900.1.p locus=Glyma.02g102900 ID=Glyma.02g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGA

>Glyma.02g102900.2 sequence-type=CDS polypeptide=Glyma.02g102900.2.p locus=Glyma.02g102900 ID=Glyma.02g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGA

>Glyma.02g102900.3 sequence-type=CDS polypeptide=Glyma.02g102900.3.p locus=Glyma.02g102900 ID=Glyma.02g102900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCGGTAGTTTAGAACCGTTGGATTTGGGTGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTCGAACTCATGCGAGACCCAGTAACCGTCTGCACCGGTCAAACCTACGACCGCGCCAGCATCGAGGCATGGGTCAGCACCGGCAACAGCACGTGTCCGGTCACACGCGCCACTCTCACAGACTTCACCCTAATCCCGAACCACACCCTTCGCCGCCTTATCCAAGAGTGGTGCGTCGCTAACCGCGCTTTTGGCGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCTGCCTTAGTTCGCTCTCTCCTCAACCAAGCTTCTTCCGGTTCTGCCCCTGCTCACCTCCGCCTTTCTTCCATTCGCCGACTCAGACAACTCGCTCGCGACTCGGACAAGAATCGTTCCCTCATTGCCTCTCACAACGTTCGCCAGATCCTTCTCCCTATCGTTTTCAACAACGGTTCGGATGAGTTGAAAAACGAATCGCTCGCGCTACTCGTTATGTTTCCGCTTGGTGAGTCGGAATGTGCTTCGCTCGCATCTGATTCTGTGAAGATTGGCTATCTATCGCGGATGTTGACGCATAACTCGTTCGACGTCCGAGTCAACTCGGCCGCGTTGATCGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTACGCGCGGAGGTGAGCAGTGTCGACGAAATCTACGACGGAGTGGTGGATCTGCTCCGGAGCCCGATCTCGCACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGTTTGGTGAAGAATACGCGGCAGAAGGCGGTGGACGCCGGCACGCCGGCGGTTCTAGTCGACCGGCTCGCGGACTTCGAGAAGTGCGACGCGGAGAGGGCGCTGGCCACGGTGGAGCTGCTCTGCCGGATTCCGGCGGGATGCGAGGCGTTCGCCGGACACGCGCTGACGGTGCCGATGCTGGTGAAGATAATTCTGAAAATCTCCGACCGTGCGACGGAGTACGCCGCCGGAGCGCTGCTCTCGCTGTGTTCGGAATCGGAGCGGTGCCAGCGCGAGGCGGTGGCGGCGGGCGTGCTGACTCAGCTTCTGCTTCTCGTGCAGAGCGATTGCACGGAGAGAGCGAAGAGGAAGGCGCAGATGCTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTCCATCGGAAATAATTCTGACGATTTTGCATGCAGCCAGGTCGTTGTGGTTCCCTTTTGA
Predicted protein sequences of Glyma.02g102900
>Glyma.02g102900.1.p sequence-type=predicted peptide transcript=Glyma.02g102900.1 locus=Glyma.02g102900 ID=Glyma.02g102900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNSTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHLRLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNNGSDELKNESLALLVMFPLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVPF*

>Glyma.02g102900.2.p sequence-type=predicted peptide transcript=Glyma.02g102900.2 locus=Glyma.02g102900 ID=Glyma.02g102900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNSTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHLRLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNNGSDELKNESLALLVMFPLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVPF*

>Glyma.02g102900.3.p sequence-type=predicted peptide transcript=Glyma.02g102900.3 locus=Glyma.02g102900 ID=Glyma.02g102900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNSTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHLRLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNNGSDELKNESLALLVMFPLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDEIYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVPF*






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