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Report for Sequence Feature Glyma.02g097200

Feature Type:gene_model
Chromosome:Gm02
Start:8731435
stop:8737551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g097200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27980.1AT dihydrosphingosine phosphate lyase JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0019752GO-bp carboxylic acid metabolic process EnsemblGenomesN/AIEA
GO:0019752GO-bp carboxylic acid metabolic process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity EnsemblGenomesN/AIEA
GO:0016831GO-mf carboxy-lyase activity JGI N/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG1383 KOG Glutamate decarboxylase/sphingosine phosphate lyase JGI N/AIEA
PTHR11999Panther GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE JGI N/AIEA
PTHR11999:SF5Panther SPHINGOSINE-1-PHOSPHATE LYASE JGI N/AIEA
PF00282PFAM Pyridoxal-dependent decarboxylase conserved domain JGI N/AIEA
PWY-6483SoyCyc9 ceramide degradation Plant Metabolic Network ISS
GN7V-52056SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.02g097200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g097200
ParalogEvidenceComments
Glyma.18g284300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g097200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g10750 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g097200
>Glyma.02g097200.2 sequence-type=transcript locus=Glyma.02g097200 ID=Glyma.02g097200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTTTCACCAAATATTTTATATACTGCACTGtccttattccttcttctccaatctccattgttgatattctcttcttccttcgttccttcCAATGGATTCTTCGATCTCTCACTTCAGAGCCTCCGCGAATTCCTTCCTCTCCCAATACGAACCTCTCGCTTTGCTTCTCGCTCCTCTCCTCTCTCTCCTCTTCGCCCTCGCTCTCCGCTCCTTCTTCCACCTCCTCTCCGAGAACGGACTCAAAGCCACGCTCCTAGGGTTTCTCATTAACTCCTTCAAATTGGTCCCAGGTGTGAAGAGATACATAGATGCCGAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACAACTGTCCTTGAGAAAATGAGAGAGGAGAAAATTAATGACGCAGTTTGGCAAGGCAAATGCTCTGCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAAAGTTCTGGAGGACAAATATGTGGCAACATGACATCCGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAATTATGGCGTGCACCAGTTAACAAGAATTTTCAAGCAGATGCGAAAGCTATTCGACGTCACATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTACTACCATTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTTGATGTACATAAATACGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACCGAATGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGTCTTATTGCTGGTGCATGGGCAGCGATGATGTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGGTCAAGAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAAACCTGACATGACGATAGTGGCTTTTGGATCTGCTGTTCTGGATATATTCGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATCTGTGTGACCCTGCAACATGTGCCAATTGTTGAAGACTTTCTCAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTAGCACCTATATATGGTGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGATGGTACCTGCTAATGGCGTTCAACATTTGTACCAGACTTTTCAGGAAACATGTACTGTAGTGGACCTTTACTTTGATAATATTCCATTTTATAGTGCATTCTTTCATATTGGGGAGAAAACTAAAGACTACTAATAAGGCCTTGTTTGTTTGTGTGTGTATGCTCTTGTACGTTGAAGAGGCCACTTCGTTTTATATTCATATCTAAGCATTATCATGGGTGGTGGGGGGACATTGGGGACAGTAATACTTCTGAAACTCCCAGAACAAAAATAATGCACATGAGATTGATTGTACAAAAACAAAATGTACGTGTGTTTGATAATCA

>Glyma.02g097200.3 sequence-type=transcript locus=Glyma.02g097200 ID=Glyma.02g097200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTTTCACCAAATATTTTATATACTGCACTGtccttattccttcttctccaatctccattgttgatattctcttcttccttcgttccttcCAATGGATTCTTCGATCTCTCACTTCAGAGCCTCCGCGAATTCCTTCCTCTCCCAATACGAACCTCTCGCTTTGCTTCTCGCTCCTCTCCTCTCTCTCCTCTTCGCCCTCGCTCTCCGCTCCTTCTTCCACCTCCTCTCCGAGAACGGACTCAAAGCCACGCTCCTAGGGTTTCTCATTAACTCCTTCAAATTGGTCCCAGGTGTGAAGAGATACATAGATGCCGAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACAACTGTCCTTGAGAAAATGAGAGAGGAGAAAATTAATGACGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAAAGTTCTGGAGGACAAATATGTGGCAACATGACATCCGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAATTATGGCGTGCACCAGTTAACAAGAATTTTCAAGCAGATGCGAAAGCTATTCGACGTCACATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTACTACCATTTGCTCGTGAGCTTGGGTGCTATGCTTTTATATTTGAATCTGATCTTTGGCACCGAATCCATCAATATATTAGGCCTTTTCTTCTTTCTTTGGTAATATATTTCATTTTTTTTAAATACACGAATTTTTCAATATATCTCTATTTGCAACTGCAAGTCTTATTGTTTGTTTTGGGATTATGTTGCTAGCATAGTATTCTCTTCAGCTTCTATTG
Coding sequences of Glyma.02g097200
>Glyma.02g097200.1 sequence-type=CDS polypeptide=Glyma.02g097200.1.p locus=Glyma.02g097200 ID=Glyma.02g097200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCTTCGATCTCTCACTTCAGAGCCTCCGCGAATTCCTTCCTCTCCCAATACGAACCTCTCGCTTTGCTTCTCGCTCCTCTCCTCTCTCTCCTCTTCGCCCTCGCTCTCCGCTCCTTCTTCCACCTCCTCTCCGAGAACGGACTCAAAGCCACGCTCCTAGGGTTTCTCATTAACTCCTTCAAATTGGTCCCAGGTGTGAAGAGATACATAGATGCCGAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACAACTGTCCTTGAGAAAATGAGAGAGGAGAAAATTAATGACGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAAAGTTCTGGAGGACAAATATGTGGCAACATGACATCCGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAATTATGGCGTGCACCAGTTAACAAGAATTTTCAAGCAGATGCGAAAGCTATTCGACGTCACATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTACTACCATTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTTGATGTACATAAATACGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACCGAATGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGTCTTATTGCTGGTGCATGGGCAGCGATGATGTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGGTCAAGAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAAACCTGACATGACGATAGTGGCTTTTGGATCTGCTGTTCTGGATATATTCGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATCTGTGTGACCCTGCAACATGTGCCAATTGTTGAAGACTTTCTCAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTAGCACCTATATATGGTGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGATGGTACCTGCTAA

>Glyma.02g097200.2 sequence-type=CDS polypeptide=Glyma.02g097200.2.p locus=Glyma.02g097200 ID=Glyma.02g097200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCTGCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAAAGTTCTGGAGGACAAATATGTGGCAACATGACATCCGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAATTATGGCGTGCACCAGTTAACAAGAATTTTCAAGCAGATGCGAAAGCTATTCGACGTCACATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTACTACCATTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCAGTTGATGTACATAAATACGGTTTAGCTCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACCGAATGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGTCTTATTGCTGGTGCATGGGCAGCGATGATGTCTCTAGGGAAAGAAGGTTACTTGAAAAATACAAAAGCAATTATGGAAGGGTCAAGAAGAATACAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATTGTTGGAAAACCTGACATGACGATAGTGGCTTTTGGATCTGCTGTTCTGGATATATTCGAAGTCAATGATGTTATGTCATCCAAAGGGTGGCATTTGAATGCATTACAGAGACCCAACAGCATCCATATCTGTGTGACCCTGCAACATGTGCCAATTGTTGAAGACTTTCTCAATGATTTGAAGGAATCTGTGAAAACTGTGAAAGCAAATCCAGGTCCAATAAGTGGAGGCCTAGCACCTATATATGGTGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGATGGTACCTGCTAA

>Glyma.02g097200.3 sequence-type=CDS polypeptide=Glyma.02g097200.3.p locus=Glyma.02g097200 ID=Glyma.02g097200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCTTCGATCTCTCACTTCAGAGCCTCCGCGAATTCCTTCCTCTCCCAATACGAACCTCTCGCTTTGCTTCTCGCTCCTCTCCTCTCTCTCCTCTTCGCCCTCGCTCTCCGCTCCTTCTTCCACCTCCTCTCCGAGAACGGACTCAAAGCCACGCTCCTAGGGTTTCTCATTAACTCCTTCAAATTGGTCCCAGGTGTGAAGAGATACATAGATGCCGAAAAACAAAAGGTTGTGGATAAGTTGCAATCTGATAGTAAATCTAAAAGAGAAGGTTGGAAAACTGAGTTGCCAAGCACAGGATTAGGGACAACTGTCCTTGAGAAAATGAGAGAGGAGAAAATTAATGACGCAGTTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAATGAGGCATGTTCAATGTTTGCACATACCAATCCCCTGCATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCAGCACTTCTTGGAAGTAAGGAAAAAAGTTCTGGAGGACAAATATGTGGCAACATGACATCCGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATTATTCCCGAGTCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAATTATGGCGTGCACCAGTTAACAAGAATTTTCAAGCAGATGCGAAAGCTATTCGACGTCACATTAACAAAAATACCATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAGTAATTGACCCCATCGAAGAACTTGGTCATCTGGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTACTACCATTTGCTCGTGAGCTTGGGTGCTATGCTTTTATATTTGAATCTGATCTTTGGCACCGAATCCATCAATATATTAGGCCTTTTCTTCTTTCTTTGGTAATATATTTCATTTTTTTTAAATACACGAATTTTTCAATATATCTCTATTTGCAACTGCAAGTCTTATTGTTTGTTTTGGGATTATGTTGCTAG
Predicted protein sequences of Glyma.02g097200
>Glyma.02g097200.1.p sequence-type=predicted peptide transcript=Glyma.02g097200.1 locus=Glyma.02g097200 ID=Glyma.02g097200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSSISHFRASANSFLSQYEPLALLLAPLLSLLFALALRSFFHLLSENGLKATLLGFLINSFKLVPGVKRYIDAEKQKVVDKLQSDSKSKREGWKTELPSTGLGTTVLEKMREEKINDAVWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRAPVNKNFQADAKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLKNTKAIMEGSRRIQKGIEEIAELFIVGKPDMTIVAFGSAVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC*

>Glyma.02g097200.2.p sequence-type=predicted peptide transcript=Glyma.02g097200.2 locus=Glyma.02g097200 ID=Glyma.02g097200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLCYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRAPVNKNFQADAKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLKNTKAIMEGSRRIQKGIEEIAELFIVGKPDMTIVAFGSAVLDIFEVNDVMSSKGWHLNALQRPNSIHICVTLQHVPIVEDFLNDLKESVKTVKANPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC*

>Glyma.02g097200.3.p sequence-type=predicted peptide transcript=Glyma.02g097200.3 locus=Glyma.02g097200 ID=Glyma.02g097200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSSISHFRASANSFLSQYEPLALLLAPLLSLLFALALRSFFHLLSENGLKATLLGFLINSFKLVPGVKRYIDAEKQKVVDKLQSDSKSKREGWKTELPSTGLGTTVLEKMREEKINDAVWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRAPVNKNFQADAKAIRRHINKNTILIVGSAPGFPHGVIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGCYAFIFESDLWHRIHQYIRPFLLSLVIYFIFFKYTNFSIYLYLQLQVLLFVLGLCC*






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