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Report for Sequence Feature Glyma.02g094300

Feature Type:gene_model
Chromosome:Gm02
Start:8448455
stop:8455698
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g094300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55410.1AT 2-oxoglutarate dehydrogenase, E1 component JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0045252GO-cc oxoglutarate dehydrogenase complex EnsemblGenomesN/AIEA
GO:0004591GO-mf oxoglutarate dehydrogenase (succinyl-transferring) activity EnsemblGenomesN/AIEA
GO:0016624GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor EnsemblGenomesN/AIEA
GO:0016624GO-mf oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor JGI N/AIEA
GO:0030976GO-mf thiamine pyrophosphate binding EnsemblGenomesN/AIEA
KOG0450 KOG 2-oxoglutarate dehydrogenase, E1 subunit JGI N/AIEA
PTHR23152Panther 2-OXOGLUTARATE DEHYDROGENASE JGI N/AIEA
PF00676PFAM Dehydrogenase E1 component JGI N/AIEA
PF02779PFAM Transketolase, pyrimidine binding domain JGI N/AIEA
PWY-5084SoyCyc9 2-oxoglutarate decarboxylation to succinyl-CoA Plant Metabolic Network ISS
GN7V-59245SoyCyc9-rxn oxoglutarate dehydrogenase (succinyl-transferring) Plant Metabolic Network ISS

Expression Patterns of Glyma.02g094300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g094300
ParalogEvidenceComments
Glyma.18g287400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g094300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g10470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g094300
>Glyma.02g094300.1 sequence-type=CDS polypeptide=Glyma.02g094300.1.p locus=Glyma.02g094300 ID=Glyma.02g094300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATGGTTTAGAGCTGGAACTAGCATAGCAAAGCATGCAATTAGGAGAACCCTTTCCAAGGGTGGATCCACATACCTTGTGTCAAGGGCAAGGTTCCTTCCATCGATACCATCATCATCGTCATCACCATATAGCAGAAGCTTCCACAGCACGGTTTTCAAGGAACAAGCTGCACCTGTTCCACGTGCGGTTCCTCTTTCAAAGTTAACAGATAGTTTCTTAGATGGCACAAGCAGTGTGTATTTGGAAGAGCTTCAGAGGGCTTGGGAGGCTGATCCCAACAGTGTGGATGAGTCATGGGACAATTTCTTCAGGAACTTTGTGGGGCAGGCAACAACCTCACCTGGAATTTCTGGTCAGACAATTCAGGAAAGTATGAGGTTGTTGTTGCTGGTGAGGGCGTACCAGGTTAATGGTCACATGAAGGCCAAGTTGGATCCCTTGAATCTGGAACCAAGGCAAATCTCTGAGGATTTGGACCCTGCACTTTATGGCTTCACTGAGGCTGATCTTGATAGAGAGTTCTTCTTAGGGGTGTGGAGGATGGCTGGTTTCTTGTCCGAGAATCGCCCCGTGCAAACCCTTAGATCCATTTTGACAAGGCTTGAGCAGGCCTATTGTGGAAGCATTGGATATGAGTATATGCACATTGCAGATCGTCATAAGTGTAATTGGCTTAGGGACAAGATTGAGACCCCCACCCCTACACAGTTTAATAGGGAGAGGCGTGAGGCTATATTTGATAGGCTTGCTTGGAGTTCCTTGTTTGAGAACTTCTTGGCCACCAAGTGGACCTCTGCAAAGAGGTTTGGTCTTGAGGGTGGAGAGACTCTTATTCCCGGAATGAAGGAAATGTTTGATAGGGCATCTGATCTTGGGGTTGAGAGCATAGTTATAGGAATGGCACATCGAGGGAGGCTGAATGTTTTGGGGAATGTGGTAAGGAAGCCCCTGCGGCAGATTTTCTGCGAGTTTAGCGGTGGTCTTCAGCCTGAGGGGGAAGTTGGACTCTACACTGGAACTGGAGATGTTAAGTATCATTTGGGGACATCGTATGATCGCCCTACTAGGGGTGGCAAGAGGATTCATTTGTCTTTGGTGGCAAATCCTAGTCACTTGGAAGCTGTCAATCCGCTTGTTATTGGGAAAACTCGAGCCAAGCAGTATTACGCAAATGACGTGGATAGAACGAAGAACATGGGTGTGTTGATTCATGGAGATGGAAGTTTTGCTGGACAGGGTGTGGTCTATGAAACCCTGCATTTAAGTGCTCTTCCAAATTACACTACTGGTGGGACGATTCACATCGTGTTTAACAATCAGGTTGCATTTACAACTGATCCGACTTCTGGCAGGTCTTCACAATATTGCACTGATGTTGCCAAGGCTTTGGATGCTCCCATCTTTCACGTGAATGGTGATGATGTTGAAGCAGTTGTTCATGCCTGTGAACTTGCTGCAGAGTGGCGCCAGACTTTCCACTCTGATGTGGTTGTCGACTTGGTGTGTTACCGTCGATTTGGCCACAATGAGATTGATGAACCATCTTTCACTCAGCCTAAAATGTACAAGGTAATCCGAAGCCATCCATCAACTCTTGAGATCTATGAGAAGAACCTTTTGGAATCAGGGGAGTTGACACAAGAAGAAATTGATAGGATCCACAAGAAGGTCACATCAATTCTAAATGAAGAATTTTTGGCTAGCAAAGAATACATTCCAAAAAGAAGAGATTGGCTTTCAGCATATTGGCTTGGTTTCAAGTCACCTGAACAGCTTTCACGTATCCGAAACACTGGTGTGAAACCAGAGATCTTGAAAACTGTTGGAAAAGCAATCACAACCATCCCTGAAAATTTCACACCTCATAGAGCAGTGAAGAGGATTTATGAACAACGGGCCCAAATGATTGAAACTGGGGAAGATATTGACTGGGGATTTGCAGAGGCGCTTGCTTATGCTACCTTGCTTATTGAAGGTAACCATGTTCGATTAAGTGGTCAGGATGTTGAAAGAGGAACTTTTAGTCACCGCCATGCTGTAGTTCACGATCAGACAACAGGGGAGAAATATTGTCCCCTGGACCATGTTATAATGAACCAAGACGAAGAGATGTTTACTGTTAGCAATAGTTCACTTTCTGAGTTTGGTGTTCTTGGATTTGAATTGGGTTACTCAATGGAAAATCCCAATTCATTGATAATTTGGGAGGCTCAGTTTGGTGATTTTGCTAATGGTGCTCATGTGATATTTGACAATTTTTTGGCTTCTGGTGAGGCTAAGTGGCTTCGTCAGACTGGGCTTGTTGTGTTACTTCCTCATGGTTATGATGGCCAGGGCCCAGAGCATTCAAGTGCAAGATTGGAACGCTTTCTTCAGATGGCTGATGACAACCCTCATGTTATCCCTGAGATGGATCCAACCCTCCGGAAGCAGATTCAGGAGTGTAATTTGCAGATTGTGAATGTCACAACTCCTGCTAATTTTTTCCATGTTCTAAGGAGGCAGGTACATAGAGATTTTCGCAAACCTCTCATTGTAATGTCCCCTAAGAACCTGCTTCGTAGCAAGGCTTGCAGATCAAATTTATCTGAGTTTGATGATGTCCAAGGCCACCCAGGCTTTGACAAACAGGGAACCAGATTCAAGCGCCTCATAAAAGACCAAAATGCCCACAAAGATGTTGAGGAGGGTATTAGACGTTTAGTACTTTGCTCTGGAAAAGTTTACTATGAACTTGATGAACAACGAACAAAGGTTGATGCAAATGATGTTGCAATATGTAGGGTGGAACAGCTTTGTCCTTTCCCTTATGACCTTGTCCAACGAGAGCTTAAACGATATCCAAATGCTGAGGTTGTTTGGTGTCAAGAAGAGCCAATGAACATGGGTGGATACACTTATGTTTTACCCCGACTTATATCTTCAATGAAAGCTGTGAATAGGGGAGGTTACGACGATGTCAAATATATTGGTCGTGCTCCATCCGCGGCCACAGCCACTGGCTTCCTCAAGGTTCACCAGAAGGAGCAGACTGAGATTGCTGAAAAAGCCGTTCAACAAGAACCAATCGACTTCCCATTTTGA
Predicted protein sequences of Glyma.02g094300
>Glyma.02g094300.1.p sequence-type=predicted peptide transcript=Glyma.02g094300.1 locus=Glyma.02g094300 ID=Glyma.02g094300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAWFRAGTSIAKHAIRRTLSKGGSTYLVSRARFLPSIPSSSSSPYSRSFHSTVFKEQAAPVPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQATTSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLNLEPRQISEDLDPALYGFTEADLDREFFLGVWRMAGFLSENRPVQTLRSILTRLEQAYCGSIGYEYMHIADRHKCNWLRDKIETPTPTQFNRERREAIFDRLAWSSLFENFLATKWTSAKRFGLEGGETLIPGMKEMFDRASDLGVESIVIGMAHRGRLNVLGNVVRKPLRQIFCEFSGGLQPEGEVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVNPLVIGKTRAKQYYANDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVFNNQVAFTTDPTSGRSSQYCTDVAKALDAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYKVIRSHPSTLEIYEKNLLESGELTQEEIDRIHKKVTSILNEEFLASKEYIPKRRDWLSAYWLGFKSPEQLSRIRNTGVKPEILKTVGKAITTIPENFTPHRAVKRIYEQRAQMIETGEDIDWGFAEALAYATLLIEGNHVRLSGQDVERGTFSHRHAVVHDQTTGEKYCPLDHVIMNQDEEMFTVSNSSLSEFGVLGFELGYSMENPNSLIIWEAQFGDFANGAHVIFDNFLASGEAKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMADDNPHVIPEMDPTLRKQIQECNLQIVNVTTPANFFHVLRRQVHRDFRKPLIVMSPKNLLRSKACRSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNAHKDVEEGIRRLVLCSGKVYYELDEQRTKVDANDVAICRVEQLCPFPYDLVQRELKRYPNAEVVWCQEEPMNMGGYTYVLPRLISSMKAVNRGGYDDVKYIGRAPSAATATGFLKVHQKEQTEIAEKAVQQEPIDFPF*






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