SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g092400

Feature Type:gene_model
Chromosome:Gm02
Start:8176609
stop:8183191
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g092400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04950.1AT TATA BOX ASSOCIATED FACTOR II 59 JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation EnsemblGenomesN/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0051090GO-bp regulation of DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0051090GO-bp regulation of sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0000124GO-cc SAGA complex EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005669GO-cc transcription factor TFIID complex EnsemblGenomesN/AIEA
GO:0046695GO-cc SLIK (SAGA-like) complex EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0046982GO-mf protein heterodimerization activity EnsemblGenomesN/AIEA
KOG2549 KOG Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) JGI N/AIEA
PTHR10221Panther TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 JGI N/AIEA
PF02969PFAM TATA box binding protein associated factor (TAF) JGI N/AIEA
PF07571PFAM Protein of unknown function (DUF1546) JGI N/AIEA

Expression Patterns of Glyma.02g092400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g092400
ParalogEvidenceComments
Glyma.18g290200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g092400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g10220 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g092400
>Glyma.02g092400.1 sequence-type=CDS polypeptide=Glyma.02g092400.1.p locus=Glyma.02g092400 ID=Glyma.02g092400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCATTGTTCCCAAAGAGACGATTGAAGTTATCGCGCAGAGCATTGGGATCAACAATCTGTCTCATGATGTCGCTCTTGCCGTCGCTCCCGATGTCGAATACCGCATGCGCCAGATTATGCAGGAGGCAATTAAGTGCATGCGCCATTCCAAGAGAACCACTTTGACGGCAGATGATGTCGATGCTGCACTCAACTTGAAGAATGTTGAACCAATATATGGATTTGCATCTGGTGGCCCTTTACGGTTCAAAAGAGCTGTTGGACACAGAGACTTGTTTTATATTGATGACAAGGATGTAGATTTAAAAGATGTTATTGAAGCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGCCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGTAATTTCAGCTCCTTCTGATGTCAAAAAGCATGAGCAGAAAGATGATAACCTTCCAGTTGACATCAAATTGCCTGTTAAGCATGTATTATCCAGAGAGCTTCAGCTGTATTTTGACAAAGTGGCTGAGCTAACTTTGAGCGAGTCTGATTCAGTTCTCTTTAAAGAAGCATTAGTAAGTTTGGCTACTGATTCAGGACTTCATCCACTAGTTCCTTATTTCACATGCTTTATAGCTGATGAGGTTTCTCGTGGTTTGAATAATTTTCCTCTTCTATTTGCCTTGATGCGAGTTGTTAGTAGCCTTTTGCAAAACCCTCACATCCAAATTGAACCATATCTACACCAGTTGATGCCATCTGTTGTGACTTGCCTTGTTGCTAAAAGGTTGGGCACTAGGTTGGCAGACAACCACTGGGAACTTAGAGACTTTACGGCTCATCTGGTTGCCTCAATATGTAAAAGGTTTGGACATGTTTATAGTAATCTCCAGTCTCGGTTGACAAAAACATTGCTGAATGCATTCTTGGATCCCAAGAAGGCATTGACACAACACTATGGTGCTATTCAGGGATTAGGAGCACTGGGACCCAACGTGGTTCGCCTTCTTTTGCTGCCAAACCTTGAAACATATATGCAACTTCTTGAACCAGAGATGCTTCTTGAGAAGCAAAAAAATGAATTAAAAAGGCATGAAGCTTGGAGGGTTTATGGAGCCTTGCTGCGTGCTGCAGGTCAGTGTATATATGATCGACTAAAGATTTTCCCAACTTTTCCATCTCCTCCTCTTCATGCTGTCTGGAAGACCAATTCAAAAGTTCTTACTTCTTCAACTTATAAACGCAAGGCAAGCCCTGATCAATTGGAACAGCAGCCACCTTTGAAAAAAGCTGCTACCGATGGTGAGGTTGGTGTGGACCTAATGAATTTCTCACCAGTTCATAAGCAAGAGGAGGCAGGGACTCAAGCTTCTTCAGCTGATTCAATAATTGGCACATCATCATCTTCTGCACAGATGAAAAATGAGACTACTTTAGATGGCGAACTTAGAGGTAAGAGGGGTGATACTCAGGCATTGAAGACATCTGCTGCTCTCACCCAGGTTTGGAAGGACGAGCTTAACTCAGGACGTACCCTGGTATCATTGTTTGAGTTGTTTGGTGAAGGAATTCTCTCCTTCATTAAGGCTCCTGAGATGTATATGTTCTTGTAA
Predicted protein sequences of Glyma.02g092400
>Glyma.02g092400.1.p sequence-type=predicted peptide transcript=Glyma.02g092400.1 locus=Glyma.02g092400 ID=Glyma.02g092400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSIVPKETIEVIAQSIGINNLSHDVALAVAPDVEYRMRQIMQEAIKCMRHSKRTTLTADDVDAALNLKNVEPIYGFASGGPLRFKRAVGHRDLFYIDDKDVDLKDVIEASLPKAPLDTAVTCHWLAIEGVQPAIPENAPVEVISAPSDVKKHEQKDDNLPVDIKLPVKHVLSRELQLYFDKVAELTLSESDSVLFKEALVSLATDSGLHPLVPYFTCFIADEVSRGLNNFPLLFALMRVVSSLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGTRLADNHWELRDFTAHLVASICKRFGHVYSNLQSRLTKTLLNAFLDPKKALTQHYGAIQGLGALGPNVVRLLLLPNLETYMQLLEPEMLLEKQKNELKRHEAWRVYGALLRAAGQCIYDRLKIFPTFPSPPLHAVWKTNSKVLTSSTYKRKASPDQLEQQPPLKKAATDGEVGVDLMNFSPVHKQEEAGTQASSADSIIGTSSSSAQMKNETTLDGELRGKRGDTQALKTSAALTQVWKDELNSGRTLVSLFELFGEGILSFIKAPEMYMFL*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo