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Report for Sequence Feature Glyma.02g090300

Feature Type:gene_model
Chromosome:Gm02
Start:7939823
stop:7944358
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g090300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66730.1AT DNA LIGASE 6 JGI N/AIEA
GO:0006266GO-bp DNA ligation EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0006303GO-bp double-strand break repair via nonhomologous end joining EnsemblGenomesN/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0006310GO-bp DNA recombination JGI N/AIEA
GO:0031848GO-bp protection from non-homologous end joining at telomere EnsemblGenomesN/AIEA
GO:0036297GO-bp interstrand cross-link repair EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0000784GO-cc nuclear chromosome, telomeric region EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003684GO-mf damaged DNA binding EnsemblGenomesN/AIEA
GO:0003910GO-mf DNA ligase (ATP) activity EnsemblGenomesN/AIEA
GO:0003910GO-mf DNA ligase (ATP) activity JGI N/AIEA
GO:0035312GO-mf 5'-3' exodeoxyribonuclease activity EnsemblGenomesN/AIEA
PTHR10459Panther DNA LIGASE JGI N/AIEA
PTHR10459:SF10Panther DNA LIGASE 1 JGI N/AIEA
PF04675PFAM DNA ligase N terminus JGI N/AIEA

Expression Patterns of Glyma.02g090300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g090300 not represented in the dataset
Glyma.02g090300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g090300
ParalogEvidenceComments
Glyma.18g292900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g090300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g09960 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g090300
>Glyma.02g090300.1 sequence-type=CDS polypeptide=Glyma.02g090300.1.p locus=Glyma.02g090300 ID=Glyma.02g090300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTTCGAAACCCTAGACTCCACCCAACTATTCCTCATCGCCCTCAAAACCCTCCAACCCCAACCCTCACTCCAAACTCATCATCCCCCACACCCGTTTCCTTGTCAACGCCTTCAGCCACGCCGGCCCCCACTCCCACTACTTCGACCTCTCCCATTTCTGGTCCCGCGGCGTCATCTTCTACACCTCTCACCTCGCCGCCCTCGTCGTCCCCCTCCCACTCTGCTAGCCGCTCTGCATCGCCGGCGTCCAAGTCACGCCAACCACTGTCCCAGTGCCGTCCAGTCCCTCTTCATCCCCCGCGCCACCGATGACACCACTGCCCTTAGGTACGCCCACAACAGCGATTTTCGCTTTTCTAATTGCATGGTTTCTGAACCCGCCCTTGCCCCATTCGTCGGTGTCGATGCAATGTTTCTTGACACCACCTATTGTAACCCTAACGTTGAGTGCAAGTGTGAGAATAATAGTAATGATAAAGTTTTGTTTCTTGTTGCTACTTATGTCATTGGGAAGGAGAAGATTTTGCCTAAGCTTGCGCGTAGGTTTAAGAGGAAGATACACGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAATGGTGAGTTTATTAAGGATGAGAAGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCTTACTTTAGGCCTAATTTTGTCAGGATGAAGGAGGTTGTCAGCTTTGTTCCAACCCAATGGACCTATGAAGTCAAGCGGAATAAGTTTGCGGTGAAGTCCAAGGATTCGTTTCAGATTAATCTTGTGCCATATATATGTGATGTTGAGAAGAGTGACAGTAAACATGCTGACAAAATGAGGAAGTACTTTACCTGGCTGGTTGATGAGACTGCCAACAAGCAGGATTTTTTAAGGGGTTTTCATTGTGTCCCTTGTGAGAAGGGTGAAGTGGGTTTCAAGGCTGAGAAGGTTGTTAGTGATGCTCGGGAGCCAGGGCAAGACATGGACAAAGAAGTCAATGCATTGGAGAAGACAGAAGGTGATATAGGTATTGGTCCAGATGTGGCTGTGGGTTTGTCTTCTTTTATGGAAGAAACATGGAGCAATGTCGTTGAAGCTGTTTCTAATTTCTATAAACGTGAAACTGAATTTCATGAGCAAGTGATTTCTTGTCAAAATCCTGTTTCAACACCCAAGGGCTGCTCATTAAATACCGATTCACTTGCAAAACCATGTCTTAATACAAACAACACTGGCAAAAATATTAACATTTTTTCAAGTCAAGACTCTAAACTAAATAACCTGAGGCATACAGTGCCTAGTCCCATTTCTCCTGCCAAAAGGAAGAGAAGTAGTGACAGTAAGCAAAAAAAAAAAAAACCTAAAGTCAAAGCAAGATCTGAACCAAGTGGTTCAAAGCAGGCCACAATCACGAGATTCTTCAGTAAATTAATACCTGAGATGCCTGGTGGTGCTCATTCTTATAATTCTGAACCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTATTGCCAACTGATGATAGGCAATTGTACAAGGATGAAATTGATCAATTTATGCAAATAATAAATGGGAATGAGTCATTAAAAAAATATGCCATCACTATAATTGAGAAGACAAAAGGTGATATCAATAAGGCATTGGACATATATTACGGTAATTCTGAATATCTTGGTGAAAATAAAATATCAGTGGAGAGCAAAATTGATAGACCTGTAAAAGTCTTGAAAGATAATGTAGATGCTACCCATTTATCTCTACCACCTGAGAAATACAACCCTAAAGAACATGCAACGTGTTGGAGAGATGGACAGCCTGCACCATATTTACATATTGCACGAACCTTAAACCTGCTTGAGGGTGAGAAAGGAAAGATTAAAGCTACTTCATTGCTATGCAATATGTTCAGAAGTTTGTCGGCCTTATCTCTAGCAGATGTGCTTCCTGCTGTGTATCTATGCAATACCAAAATTGGTGCAGACCATGAAAACAAGGAACTAAATATTGGTGGAAGTTTAGTCACTGCAATATTTGGAACTAACAAAGGTGATGTTGCTCAAGAGTGTCGTCAAACACACAAGAGTGTCGTCAAACACAGATTGCTTGCAACACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTAGGCAGTGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCATCTCATGCATTCCTACTGTGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGCGCGTCATCAGCTCGTTCAGCGAGAAGATTGTCTCTTCTACGCTTAGCGCGAGAATGGAGCTAAGCCAAATTTCACTTACTCGCGCTAAGCACGCCTTCGCGGACAAAAAGCCCTTTTTAAGCCTAAATTGCAGAGAATGA
Predicted protein sequences of Glyma.02g090300
>Glyma.02g090300.1.p sequence-type=predicted peptide transcript=Glyma.02g090300.1 locus=Glyma.02g090300 ID=Glyma.02g090300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDFETLDSTQLFLIALKTLQPQPSLQTHHPPHPFPCQRLQPRRPPLPLLRPLPFLVPRRHLLHLSPRRPRRPPPTLLAALHRRRPSHANHCPSAVQSLFIPRATDDTTALRYAHNSDFRFSNCMVSEPALAPFVGVDAMFLDTTYCNPNVECKCENNSNDKVLFLVATYVIGKEKILPKLARRFKRKIHVDARKMEVLRVLGYGENGEFIKDEKESNIHVVGWNVLGETWPYFRPNFVRMKEVVSFVPTQWTYEVKRNKFAVKSKDSFQINLVPYICDVEKSDSKHADKMRKYFTWLVDETANKQDFLRGFHCVPCEKGEVGFKAEKVVSDAREPGQDMDKEVNALEKTEGDIGIGPDVAVGLSSFMEETWSNVVEAVSNFYKRETEFHEQVISCQNPVSTPKGCSLNTDSLAKPCLNTNNTGKNINIFSSQDSKLNNLRHTVPSPISPAKRKRSSDSKQKKKKPKVKARSEPSGSKQATITRFFSKLIPEMPGGAHSYNSEPKLDQSSKVEDLLPTDDRQLYKDEIDQFMQIINGNESLKKYAITIIEKTKGDINKALDIYYGNSEYLGENKISVESKIDRPVKVLKDNVDATHLSLPPEKYNPKEHATCWRDGQPAPYLHIARTLNLLEGEKGKIKATSLLCNMFRSLSALSLADVLPAVYLCNTKIGADHENKELNIGGSLVTAIFGTNKGDVAQECRQTHKSVVKHRLLATPTPLLIKDVFSALQKISVGSGSTSRKKGIIVHLMHSYCEKEMKFLVRTLRVISSFSEKIVSSTLSARMELSQISLTRAKHAFADKKPFLSLNCRE*






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