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Report for Sequence Feature Glyma.02g089800

Feature Type:gene_model
Chromosome:Gm02
Start:7896985
stop:7897303
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g089800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38890.1AT Nucleic acid-binding, OB-fold-like protein JGI N/AIEA
GO:0000176GO-cc nuclear exosome (RNase complex) EnsemblGenomesN/AIEA
GO:0000178GO-cc exosome (RNase complex) JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
PTHR12686Panther 3'-5' EXORIBONUCLEASE CSL4-RELATED JGI N/AIEA
PF10447PFAM Exosome component EXOSC1/CSL4 JGI N/AIEA

Expression Patterns of Glyma.02g089800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g089800 not represented in the dataset
Glyma.02g089800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g089800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g09902 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g089800
>Glyma.02g089800.1 sequence-type=CDS polypeptide=Glyma.02g089800.1.p locus=Glyma.02g089800 ID=Glyma.02g089800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGACTGACTGTTGAAGTAACTGGTCACAAGGCCCATGGACCTGTTCCACAGCCTGGATCTGTAGTCATTGCTCGTGTCACCAAAGTGATGGCTAGGTCCGCTTCAGCTGATATTATGTGTGTTGGACCAAAGTCTGTTCGAGAAAAATTTACTGGCATCATTAGGTTCGCTATTCTTATACTACTACCTTCTAAGTTATCATTTGTGGATTTAGTTTGA
Predicted protein sequences of Glyma.02g089800
>Glyma.02g089800.1.p sequence-type=predicted peptide transcript=Glyma.02g089800.1 locus=Glyma.02g089800 ID=Glyma.02g089800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRLTVEVTGHKAHGPVPQPGSVVIARVTKVMARSASADIMCVGPKSVREKFTGIIRFAILILLPSKLSFVDLV*






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