SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g083800

Feature Type:gene_model
Chromosome:Gm02
Start:7254295
stop:7258670
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.02g083800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21320.2AT JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome JGI N/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0017069GO-mf snRNA binding JGI N/AIEA
PTHR10501PantherFam U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B JGI N/AIEA
PTHR10501:SF20PantherFam SMOOTH, ISOFORM T JGI N/AIEA
PF00076Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Gene model name correspondences to Glyma.02g083800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g09230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g083800
>Glyma.02g083800.1 sequence-type=CDS polypeptide=Glyma.02g083800.1.p locus=Glyma.02g083800 id=Glyma.02g083800.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGACGGACGGCTACTGGAACCGACAACAGACGCTTCTGTCTCAATCCGGCATGCTCAAACGACCGCATTCCGACTACGGTAATGAGATGCATAATAATTTTGCTCGTGATGATGACCGTACCGGTCACCGAATGCTAAAGGACACAAAAACAATTGGATCTGCTTATGACCGCTACCTTCAGAGTGGGCAACTTTCTTCATTTACTTCTGGGGAAGCCAGTACAGTTGGGGGTCTTGGGTTGGCTAGGGGTGGTGGTGGATTATCAGACCATTCACTAGCTGATCCTTCTGTCATGGGGCGTCATGGGGGTGGTGGTCCAGATCTAGCACCAAATGGACGGGGTGTTAACTATGGTGGTCAGCTACCTGTAGATGCAGTTTCCAGACCTGGACCTGAGACAGTACCTCTACCTCCAGATGCTTCAAGTACTCTATATGTTGAAGGTCTCCCTTCTGATAGCACCAGAAGGGAAGTAGCTCATATTTTTCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGTGGTAAAAGATGA

>Glyma.02g083800.3 sequence-type=CDS polypeptide=Glyma.02g083800.3.p locus=Glyma.02g083800 id=Glyma.02g083800.3.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGCATAATAATTTTGCTCGTGATGATGACCGTACCGGTCACCGAATGCTAAAGGACACAAAAACAATTGGATCTGCTTATGACCGCTACCTTCAGAGTGGGCAACTTTCTTCATTTACTTCTGGGGAAGCCAGTACAGTTGGGGGTCTTGGGTTGGCTAGGGGTGGTGGTGGATTATCAGACCATTCACTAGCTGATCCTTCTGTCATGGGGCGTCATGGGGGTGGTGGTCCAGATCTAGCACCAAATGGACGGGGTGTTAACTATGGTGGTCAGCTACCTGTAGATGCAGTTTCCAGACCTGGACCTGAGACAGTACCTCTACCTCCAGATGCTTCAAGTACTCTATATGTTGAAGGTCTCCCTTCTGATAGCACCAGAAGGGAAGTAGCTCATATTTTTCGCCCTTTTGTTGGGTATAGAGAAGTTAGACTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCATTACCTTTGTTTTGTGGACTTTGCAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGGTTATAAAGTTGATGAACTCAATCCTGAATCTAGTCACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGAAGTGGACCTGCTTTTCGTGGTAAAAGATGA
Predicted protein sequences of Glyma.02g083800
>Glyma.02g083800.1.p sequence-type=predicted peptide transcript=Glyma.02g083800.1 locus=Glyma.02g083800 id=Glyma.02g083800.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MTDGYWNRQQTLLSQSGMLKRPHSDYGNEMHNNFARDDDRTGHRMLKDTKTIGSAYDRYLQSGQLSSFTSGEASTVGGLGLARGGGGLSDHSLADPSVMGRHGGGGPDLAPNGRGVNYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPHYLCFVDFANPACAATAMSALQGYKVDELNPESSHLRLQFSRYPGPRSGPAFRGKR*

>Glyma.02g083800.3.p sequence-type=predicted peptide transcript=Glyma.02g083800.3 locus=Glyma.02g083800 id=Glyma.02g083800.3.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MHNNFARDDDRTGHRMLKDTKTIGSAYDRYLQSGQLSSFTSGEASTVGGLGLARGGGGLSDHSLADPSVMGRHGGGGPDLAPNGRGVNYGGQLPVDAVSRPGPETVPLPPDASSTLYVEGLPSDSTRREVAHIFRPFVGYREVRLVSKESKHRGGDPHYLCFVDFANPACAATAMSALQGYKVDELNPESSHLRLQFSRYPGPRSGPAFRGKR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo