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Report for Sequence Feature Glyma.02g080100

Feature Type:gene_model
Chromosome:Gm02
Start:6900450
stop:6902855
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g080100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G59280.1AT Protein Transporter, Pam16 JGI N/AIEA
GO:0030150GO-bp protein import into mitochondrial matrix EnsemblGenomesN/AIEA
GO:0005744GO-cc mitochondrial inner membrane presequence translocase complex EnsemblGenomesN/AIEA
KOG3442 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR12388Panther MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE JGI N/AIEA
PF03656PFAM Pam16 JGI N/AIEA

Expression Patterns of Glyma.02g080100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g080100
ParalogEvidenceComments
Glyma.16g164700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g080100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g08820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g080100
>Glyma.02g080100.1 sequence-type=CDS polypeptide=Glyma.02g080100.1.p locus=Glyma.02g080100 ID=Glyma.02g080100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGCCGCTAAGATTCTTGCAAACTTGATTGTAATGGGTGGAGGAATCTTGGCAAGAGCAGTTGTTCAGGCATATCGTCAAGCGCTTACTAATGCCTCAAAAAATGGTGTTGCACAAGAGACAATTCAAAATACTATGCGCAGAGCTAGCAAGGTGATGACAGAGCAAGAGGCTAGGCAGATTCTTGGTGTTACCGAGGAAACTCCCTGGGAGGAGATTATCAAGAAATATGACAATTTGTTTGAGAATAATGCCAAAAATGGGAGTTTCTACCTCCAGTCCAAAGTTCATCGGGCCAAGGAATGTCTAGAGGCAGTTCAACAAGGCAAGAGCCAGGGTACCCCTAGTTGA
Predicted protein sequences of Glyma.02g080100
>Glyma.02g080100.1.p sequence-type=predicted peptide transcript=Glyma.02g080100.1 locus=Glyma.02g080100 ID=Glyma.02g080100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS*






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