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Report for Sequence Feature Glyma.02g078000

Feature Type:gene_model
Chromosome:Gm02
Start:6736132
stop:6737896
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g078000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G77750.1AT Ribosomal protein S13/S18 family JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0015935GO-cc small ribosomal subunit EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
KOG3311 KOG Ribosomal protein S18 JGI N/AIEA
PTHR10871Panther 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 JGI N/AIEA
PTHR10871:SF1Panther 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL JGI N/AIEA
PF00416PFAM Ribosomal protein S13/S18 JGI N/AIEA

Proteins Associated with Glyma.02g078000
LocusGene SymbolProtein Name
RSP13 ribosomal protein S13

Expression Patterns of Glyma.02g078000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g078000 not represented in the dataset
Glyma.02g078000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g078000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g08540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g078000
>Glyma.02g078000.2 sequence-type=transcript locus=Glyma.02g078000 ID=Glyma.02g078000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATCTCCCACTTCCCATAGAGGCATCACCAATTCACCATCCAAAAAGGAACAAACCGCAAAGTTGGAAAACCTACATACATTGCTCGCAAGTAGCATCTGCAAATCTTCCAACTCCACCATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAGGTACTGCTCGAGAAACAGATTAATGTTTCTTATGTGTTGGAGTCAGCTTCACTTATAATATGGAATGCACATTTGCTGGACCAGTGAGTTCCCAATATTCAAGTTTCTTGAGTGCAGTGCAATTTTCCACTATATTTTCCCAATTTGTTGCTATTCCAAGGCTCAATTATTTTGCACTCTTTTGTCTTTAATTTTGTGAAATGCACTGAAGTTATTGCGATGGAATGTGTTGGTAGGTTGGACCATTGATGTTTAATGATAAATGAAAACAATCCAAGCTACTAACTTATGAAATGTGGCAGAGGATGGTGTTAATGTATCAAGCTAGAAAAAAAATTCAACTTTTATGCTTTCT

>Glyma.02g078000.3 sequence-type=transcript locus=Glyma.02g078000 ID=Glyma.02g078000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATCTCCCACTTCCCATAGAGGCATCACCAATTCACCATCCAAAAAGGAACAAACCGCAAAGTTGGAAAACCTACATACATTGCTCGCAAGTAGCATCTGCAAATCTTCCAACTCCACCATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAGGTACTGCTCGAGAAACAGATTAATGTGAGACGATGAAATAAGTTTTGTTAGAGACTTGGTTGCTTTAAGTGGAATCAATGTTTAGATTTACTTGTTCAATTGCCTTTGGCGTGTTTATCTTTGCTTTGCAAGAGTGTTATGGTCTTATTTTGCATTTTGATGAGTTTCTTTCTTGTCTTGGTTGATTAGATATGGTTAATGTGGTTTTTAATTGATATTTTTAATCATTTGCATTGGTCAAAGTTTTGTTGCAACTTTTGATATTGCG
Coding sequences of Glyma.02g078000
>Glyma.02g078000.1 sequence-type=CDS polypeptide=Glyma.02g078000.1.p locus=Glyma.02g078000 ID=Glyma.02g078000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG

>Glyma.02g078000.2 sequence-type=CDS polypeptide=Glyma.02g078000.2.p locus=Glyma.02g078000 ID=Glyma.02g078000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG

>Glyma.02g078000.3 sequence-type=CDS polypeptide=Glyma.02g078000.3.p locus=Glyma.02g078000 ID=Glyma.02g078000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG
Predicted protein sequences of Glyma.02g078000
>Glyma.02g078000.1.p sequence-type=predicted peptide transcript=Glyma.02g078000.1 locus=Glyma.02g078000 ID=Glyma.02g078000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*

>Glyma.02g078000.2.p sequence-type=predicted peptide transcript=Glyma.02g078000.2 locus=Glyma.02g078000 ID=Glyma.02g078000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*

>Glyma.02g078000.3.p sequence-type=predicted peptide transcript=Glyma.02g078000.3 locus=Glyma.02g078000 ID=Glyma.02g078000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR*






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