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Report for Sequence Feature Glyma.02g074100

Feature Type:gene_model
Chromosome:Gm02
Start:6467452
stop:6472617
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g074100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13570.1AT decapping 2 JGI N/AIEA
GO:0000290GO-bp deadenylation-dependent decapping of nuclear-transcribed mRNA EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0030145GO-mf manganese ion binding JGI N/AIEA
GO:0050072GO-mf m7G(5')pppN diphosphatase activity EnsemblGenomesN/AIEA
KOG2937 KOG Decapping enzyme complex, predicted pyrophosphatase DCP2 JGI N/AIEA
PTHR23114Panther FAMILY NOT NAMED JGI N/AIEA
PTHR23114:SF3Panther JGI N/AIEA
PF00293PFAM NUDIX domain JGI N/AIEA
PF05026PFAM Dcp2, box A domain JGI N/AIEA

Expression Patterns of Glyma.02g074100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g074100 not represented in the dataset
Glyma.02g074100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g074100
ParalogEvidenceComments
Glyma.16g155600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g074100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g08170 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g074100
>Glyma.02g074100.2 sequence-type=transcript locus=Glyma.02g074100 ID=Glyma.02g074100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CGGGTACCACTATTTAATGCGAAGAAGATCCGATCCGAGAAGAACCGAACGTGGTTTTCTTTCTGCTGCTGGAATACGGAGAGGTTTGAGAATCAGCACTGTGTCGCGATGTCTAATCATCACCGTTCTTCCTCCAAGAACGGTCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGTACGCACATTGGTTTTATGAAGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTGCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTTAGGCTTTACATTATTGCTGGAGTGAAAGATGATACAGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATAGCATGGCACCGGCTTGATGAACTTCAACCAGCAAGTGATGAAGTGATATCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGAATTTGCGTGTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCCTGACCTGGGGCCTGGCAAGAGCTTTAGGAATTTCAGATTTGATACTGCCTCGATTTTACAAGCAATGGAAACTTCCTTTTCTTCTTGAAAGTCCGTCAACCTTCCTGTAAAGTTTCCTGTAACTTAATCGATTTCCCATATTTCATCCGTACGCCAAAGTTGGTGGTATTCACTCTCCACGCTAATTAGGTTGTTGCTGTACATCATCTTCCTCAAGTTGTCTGATTGATTGAGTATGTACATTGTGTACAGGAAGTATTTGCACCTAAATAGTTTTCTCTGTTATTTTGGTATTATCTGTAAAACTAGAGTAAAGGTTCAATGTAAAAGTTACGCTGCTCCCTACATTTGCACGCACATATTCATACTCGGTCTCAGGCGGAATGAAACTGATTTGTTTGGTAAGCCTAAATAAATCTTTGCAAAGTGGCTACTTAATGGTTACTATGCAAGTGGTT
Coding sequences of Glyma.02g074100
>Glyma.02g074100.1 sequence-type=CDS polypeptide=Glyma.02g074100.1.p locus=Glyma.02g074100 ID=Glyma.02g074100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAATCATCACCGTTCTTCCTCCAAGAACGGTCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGTACGCACATTGGTTTTATGAAGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTGCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTTAGGCTTTACATTATTGCTGGAGTGAAAGATGATACAGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATAGCATGGCACCGGCTTGATGAACTTCAACCAGCAAGTGATGAAGTGATATCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGAATTTGCGTGTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCCTGACCTGGGGCCTGGCAAGAGCTTTAGGAATTTCAGATTTGATACTGCCTCGATTTTACAAGCAATGGAAACTTCCTTTTCTTCTTGA

>Glyma.02g074100.2 sequence-type=CDS polypeptide=Glyma.02g074100.2.p locus=Glyma.02g074100 ID=Glyma.02g074100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTAATCATCACCGTTCTTCCTCCAAGAACGGTCTTCCACCTCAAGAACTCCTTGACGATCTCTGCAGCCGATTTGTGCTAAATGTGCCAAAGGAAGATCTTCAGTCATTTGAAAGGATCTTGTTTCTTGTGGAGTACGCACATTGGTTTTATGAAGATAATTCTGTAGAAAATAATCCATCTCTGAAGTCATTAAATCTGAAGGAGTTCACTTCTTTACTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGTGCTTGCTAGTGAAGGGATGGAAAGGTTCAAGCTGGAGCTTCCCTCGTGGAAAAAAGAGCAAAGACGAAGAAGATCATGCATGTGCCATTAGAGAAGTCATGGAAGAAACAGGTTTTGATGTTTCAAAACTTCTGAACAAGGATGAATACCTTGAAGTTATTTTTGGACAACAGAGAGTTAGGCTTTACATTATTGCTGGAGTGAAAGATGATACAGCATTTGCTCCTCTTACCAAAAAGGAAATCAGTGAAATAGCATGGCACCGGCTTGATGAACTTCAACCAGCAAGTGATGAAGTGATATCGCGTAGCATCACCGGCCTTAAGCTTTATATGGTGGCCCCTTTTCTAGCATCATTGAAATCATGGATTTCAACACACCAACCTGCTATGGCTCCAAGGCCCGATTTGCCTCTTAAAGGAATTTGCGTGTGGAAAGCAAAACCCGGTTCTATTGGAAGTAGCTCCACAGTAATGGATATCCAGCCAACAAAACCTGAACCTGATTCTCACACCCCTGACCTGGGGCCTGGCAAGAGCTTTAGGAATTTCAGATTTGATACTGCCTCGATTTTACAAGCAATGGAAACTTCCTTTTCTTCTTGA
Predicted protein sequences of Glyma.02g074100
>Glyma.02g074100.1.p sequence-type=predicted peptide transcript=Glyma.02g074100.1 locus=Glyma.02g074100 ID=Glyma.02g074100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNHHRSSSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDELQPASDEVISRSITGLKLYMVAPFLASLKSWISTHQPAMAPRPDLPLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTPDLGPGKSFRNFRFDTASILQAMETSFSS*

>Glyma.02g074100.2.p sequence-type=predicted peptide transcript=Glyma.02g074100.2 locus=Glyma.02g074100 ID=Glyma.02g074100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSNHHRSSSKNGLPPQELLDDLCSRFVLNVPKEDLQSFERILFLVEYAHWFYEDNSVENNPSLKSLNLKEFTSLLFNSCDVLKPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVMEETGFDVSKLLNKDEYLEVIFGQQRVRLYIIAGVKDDTAFAPLTKKEISEIAWHRLDELQPASDEVISRSITGLKLYMVAPFLASLKSWISTHQPAMAPRPDLPLKGICVWKAKPGSIGSSSTVMDIQPTKPEPDSHTPDLGPGKSFRNFRFDTASILQAMETSFSS*






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