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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G03960.1 | AT | TCP-1/cpn60 chaperonin family protein | JGI | N/A | IEA |
| GO:0006457 | GO-bp | protein folding | EnsemblGenomes | N/A | IEA |
| GO:0006458 | GO-bp | 'de novo' protein folding | EnsemblGenomes | N/A | IEA |
| GO:0044267 | GO-bp | cellular protein metabolic process | JGI | N/A | IEA |
| GO:0061077 | GO-bp | chaperone-mediated protein folding | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005832 | GO-cc | chaperonin-containing T-complex | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0044183 | GO-mf | protein binding involved in protein folding | EnsemblGenomes | N/A | IEA |
| GO:0051082 | GO-mf | unfolded protein binding | EnsemblGenomes | N/A | IEA |
| KOG0362 | KOG | Chaperonin complex component, TCP-1 theta subunit (CCT8) | JGI | N/A | IEA |
| PTHR11353 | Panther | CHAPERONIN | JGI | N/A | IEA |
| PTHR11353:SF19 | Panther | CHAPERONIN CONTAINING TCP1, SUBUNIT 8 (THETA) | JGI | N/A | IEA |
| PF00118 | PFAM | TCP-1/cpn60 chaperonin family | JGI | N/A | IEA |
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Glyma.02g071900 not represented in the dataset |
Glyma.02g071900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g153200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g07910 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g071900.1 sequence-type=CDS polypeptide=Glyma.02g071900.1.p locus=Glyma.02g071900 ID=Glyma.02g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTTTCAACATTCAACCCTATGGGATTCAGTCCATGCTCAAGGAAGGCCATAAGCACCTTTCTGGCCTCGATGAAGCGGTTCTCAAGAACATCGACGCCTGCAAACAACTTTCCACTATCACTCGAACTTCCCTCGGTCCCAATGGGATGAATAAGATGGTTATAAATCACTTGGACAAGCTTTTTGTCACGAACGATGCTGGGACGATTGTGAATGAACTTGAAGTTCAGCATCCTGCTGCCAAGGTTTTGGTTTTGGCTGGGAAGGCTCAACAAGAGGAGATTGGGGATGGAGCTAATTTAACTATTTCATTTGCTGGGGAGCTCCTGCAGGGTGCCGAGGAACTTATCAGGATGGGTTTGCATCCGAGCGAGATCATCAGTGGATACACTAAAGCAATCAACAAGACTGTTCAAATATTGGATGAACTAGTTGAGGATGGTTCTGACAATATGGATGTTCGTGATAAGGAACAAGTTATTTCAAGAATGAAAGCAGCCGTTGCCAGCAAGCAATTTGGTCAAGAAGATATCATATGTTCGCTTGTTGCTGATGCATGCATCCAAGTGTGCCCCAAAAACCCTGCAAACTTTAATGTGGACAACGTTCGTGTTGCAAAGCTCTTGGGAGGGGGCTTGCATAACAGTACTGTAGTTCGAGGATTGGTTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGGTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGAACTGTCCTCATACATACAGCTGAGCAGCTAGAAAATTATTCAAAAACTGAAGAGGCTAAAGTAGAGGAGCTCATCAAGGCAGTAGCAGATTCAGGTGCCAAAGTGATTGTCAGTGGAGGAGCAGTAGGAGAAATGGCTTTGCATTTCTGTGAGCGTTACAAGCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGCTAAAACTTTGCCAACCAAACCCAGATGATCTTGGATATGTAGATTCCGTTTCAGTTCAGGAAATTGGTGGTGTCAGGGTGACCATTGTGAAAAATGAAGAGGGTGGAAATTCTGTAGCCACTGTTGTTTTACGAGGAAGTACTGATAGTATACTAGATGATCTTGAAAGAGCAGTGGATGATGGAGTGAACACTTACAAGGCAATGTGCAGGGATAGCCGCTTTGTACCTGGAGCTGCAGCTACTGAAATTGAGTTAGCTAAAAGGGTGAAAGACTTTTCCTTCAAGGAGACAGGGTTGGATCAGTATGCTATTGCAAAATTTGCTGAAAGTTTTGAAATGATTCCTAGAACTTTGGCTGAGAATGCTGGCCTAAATGCAATGGAGATCATATCTTCTCTGTATGCAGAACATGCATCTGGAAATGCCAAAGTTGGCATTGATTTGGAAGAAGGCATATGTAAGGATGTCTCAACCTTGAGCATTTGGGATCTCCATGTGACTAAGTTATTTGCTCTTAAATATGCTGCAGATGCTGCATGCACTGTACTACGTGTGGACCAGATTATTATGGCAAAACCAGCTGGTGGTCCAAGGAGAGAACAGCCTGCTGGTGGTATGGATGAAGACTAA
>Glyma.02g071900.1.p sequence-type=predicted peptide transcript=Glyma.02g071900.1 locus=Glyma.02g071900 ID=Glyma.02g071900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGFNIQPYGIQSMLKEGHKHLSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAGTIVNELEVQHPAAKVLVLAGKAQQEEIGDGANLTISFAGELLQGAEELIRMGLHPSEIISGYTKAINKTVQILDELVEDGSDNMDVRDKEQVISRMKAAVASKQFGQEDIICSLVADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTVVRGLVLKSDAVGTIKQAEKAKVAVFASGVDTSATETKGTVLIHTAEQLENYSKTEEAKVEELIKAVADSGAKVIVSGGAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGSVAMLKLCQPNPDDLGYVDSVSVQEIGGVRVTIVKNEEGGNSVATVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRFVPGAAATEIELAKRVKDFSFKETGLDQYAIAKFAESFEMIPRTLAENAGLNAMEIISSLYAEHASGNAKVGIDLEEGICKDVSTLSIWDLHVTKLFALKYAADAACTVLRVDQIIMAKPAGGPRREQPAGGMDED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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