Glyma.02g070900

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Report for Sequence Feature Glyma.02g070900

Feature Type:	gene_model
Chromosome:	Gm02
Start:	6244416
stop:	6247951
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g070900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04030.3	AT	Homeodomain-like superfamily protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0003682	GO-mf	chromatin binding	JGI	N/A	IEA
PF00249	PFAM	Myb-like DNA-binding domain	JGI	N/A	IEA
PWY-2541	SoyCyc9	plant sterol biosynthesis	Plant Metabolic Network		ISS
GN7V-67683	SoyCyc9-rxn	obtusifoliol-14α-demethylase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g070900

Locus	Gene Symbol	Protein Name
	PHR3	MYB-CC domain-containing transcription factor PHR3

Expression Patterns of Glyma.02g070900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g070900 not represented in the dataset	Glyma.02g070900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g070900

Paralog	Evidence	Comments
Glyma.16g152200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g070900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g07790	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g070900

Limit To All Plant Sequences

>Glyma.02g070900.2 sequence-type=transcript locus=Glyma.02g070900 ID=Glyma.02g070900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTGGAATAAGATTCCTGCATTTGCCAGTGGGATAAAAACAAATGCAGGTGCACCCTGATATAAATTGATAGGGCAATTTTGGTACCAAATGCAACGAGAGGTGAGGTGTCTCAGAAAGTATAATGCACACAATTCCAATGGACAAGTGCTTTCTCTAAATCAAAAGTGGAGGTGAAGAGAGCCCACAATGAAGAAAGTAGGAAGAATGACATCTATTTTTAACTAGCTATGAAATATATTGAATCAAGTTCAGTTTTGAGTTGCTTCTGTCCAAGATTCTATGCCTCACAAGGCCACTTTCCTAAGGGCATTTTCTTTATAAGGACATCTTTGAGTACAACCAAGGCTTGTGAAAATCTTGCCACGGAGAAAAAAGACATGCAAGAGCAATTGTAGAAACTTTCATGTATTTTAGTTTAAACACCAATGAAGTGCTCTTCAAGAATACAGGACAATCAATTTTCACTTTAGCTGTTTGTATCCAGAAGGAGTAGTACTCAACAGATAATGTACTACCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGCGGAGCAGACAAAGCTACGCCAAAAACAGTATTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAGCCAGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCACTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAACTTGAGCAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAAGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATATAGGTGCTGAGGGAGTTGAAGCAACCAAAGTTCAACTATCTGAACTAGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAGATTTTCAGAACTGAAAGAATTGCAAGTTTTGTGGCCTCAGCAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAACTTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCAGTTTCAAAAGGGTCTGTGGAAGAGTCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAGATTTTTTATCAGAAAGACCATCAAGCCTCTTGTCCATGAATGAAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGGGAAGAAAGAGCACTGAAACTGGGAGAGCGCCGGTGAAATTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAGGACTTACTACAATATGTAAAATATGGACATGAAAGGCTAAGAAGGTTTCATGTTGAGTTCCTACTCCATATGAGTTTTCATTTTTGGGGAGTAGTTTGCATCAAGTTTTTGGCATAGGCCAAGTACAATCCATTCAAAATAACTGAGATGAATAGAATAATTTGCTCCATCCAATATAGACTGCATGTAGAATTACTATGTACACTACATCAAACAAAAGTGAGTAGAGTATACACTATGACCCTTTACATGCGTGATGTTAATTTAAGAGTTCAAAGGTTATTCTCAAACTGACTAGATTAATCACTTGTAACCCATTTGGCAATCTATGATTCTAAATTGTGAGTATGGTAGTTGCTATA

>Glyma.02g070900.3 sequence-type=transcript locus=Glyma.02g070900 ID=Glyma.02g070900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGAGGTGAGGTGTCTCAGAAAGTATAATGCACACAATTCCAATGGACAAGTGCTTTCTCTAAATCAAAAGTGGAGGTGAAGAGAGCCCACAATGAAGAAAGTAGGAAGAATGACATCTATTTTTAACTAGCTATGAAATATATTGAATCAAGTTCAGTTTTGAGTTGCTTCTGTCCAAGATTCTATGCCTCACAAGGCCACTTTCCTAAGGGCATTTTCTTTATAAGGACATCTTTGAGTACAACCAAGGCTTGTGAAAATCTTGCCACGGAGAAAAAAGACATGCAAGAGCAATTGTAGAAACTTTCATGTATTTTAGTTTAAACACCAATGAAGTGCTCTTCAAGAATACAGGACAATCAATTTTCACTTTAGCTGTTTGTATCCAGAAGGAGTAGTACTCAACAGATAATGTACTACCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGCGGAGCAGACAAAGCTACGCCAAAAACAGTATTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAGCCAGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCACTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAACTTGAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAAGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATATAGGTGCTGAGGGAGTTGAAGCAACCAAAGTTCAACTATCTGAACTAGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAGATTTTCAGAACTGAAAGAATTGCAAGTTTTGTGGCCTCAGCAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAACTTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCAGTTTCAAAAGGGTCTGTGGAAGAGTCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAGATTTTTTATCAGAAAGACCATCAAGCCTCTTGTCCATGAATGAAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGGGAAGAAAGAGCACTGAAACTGGGAGAGCGCCGGTGAAATTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAGGACTTACTACAATATGTAAAATATGGACATGAAAGGCTAAGAAGGTTTCATGTTGAGTTCCTACTCCATATGAGTTTTCATTTTTGGGGAGTAGTTTGCATCAAGTTTTTGGCATAGGCCAAGTACAATCCATTCAAAATAACTGAGATGAATAGAATAATTTGCTCCATCCAATATAGACTGCATGTAGAATTACTATGTACACTACATCAAACAAAAGTGAGTAGAGTATACACTATGACCCTTTACATGCGTGATGTTAATTTAAGAGTTCAAAGGTTATTCTCAAACTGACTAGATTAATCACTTGTAACCCATTTGGCAATCTATGATTCTAAATTGTGA

Coding sequences of Glyma.02g070900

Limit To All Plant Sequences

>Glyma.02g070900.1 sequence-type=CDS polypeptide=Glyma.02g070900.1.p locus=Glyma.02g070900 ID=Glyma.02g070900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACTACCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGCGGAGCAGACAAAGCTACGCCAAAAACAGTATTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAGCCAGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCACTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAACTTGAGCAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAAGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATATAGGTGCTGAGGGAGTTGAAGCAACCAAAGTTCAACTATCTGAACTAGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAGATTTTCAGAACTGAAAGAATTGCAAGTTTTGTGGCCTCAGCAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAACTTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCAGTTTCAAAAGGGTCTGTGGAAGAGTCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAGATTTTTTATCAGAAAGACCATCAAGCCTCTTGTCCATGAATGAAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGGGAAGAAAGAGCACTGAAACTGGGAGAGCGCCGGTGAAATTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG

>Glyma.02g070900.2 sequence-type=CDS polypeptide=Glyma.02g070900.2.p locus=Glyma.02g070900 ID=Glyma.02g070900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACTACCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGCGGAGCAGACAAAGCTACGCCAAAAACAGTATTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAGCCAGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCACTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAACTTGAGCAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAAGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATATAGGTGCTGAGGGAGTTGAAGCAACCAAAGTTCAACTATCTGAACTAGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAGATTTTCAGAACTGAAAGAATTGCAAGTTTTGTGGCCTCAGCAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAACTTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCAGTTTCAAAAGGGTCTGTGGAAGAGTCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAGATTTTTTATCAGAAAGACCATCAAGCCTCTTGTCCATGAATGAAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGGGAAGAAAGAGCACTGAAACTGGGAGAGCGCCGGTGAAATTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG

>Glyma.02g070900.3 sequence-type=CDS polypeptide=Glyma.02g070900.3.p locus=Glyma.02g070900 ID=Glyma.02g070900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACTACCAGCAGCAGCAACAAGCTAAGAACATGCATGCTTTAAGGATGCACAGCCCCACTGAGAGGCATATGATGATGCAAGGAGGCAATGGATCAGGTGATTCAGGACTTGTTCTATCAACTGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAAAGGTTCATAGAAGCAGTCAATCAACTTGGCGGAGCAGACAAAGCTACGCCAAAAACAGTATTGAAACTAATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAGTACAGGATCAGTAAAAATATGCATGGACAAACCAATACTAGCAACAATAAAATTGCATCAACCATGGAAGCAGCAGCCAGAATTTCAGAAGCAAGTGGAGTTCAAATGAAACATTTAAGCATAGGCCTCCAGACAAACAAAAATTCAGAAATAAATGATGCACTACAGATGCAAATTGAAGTACAAAGAAGACTGCATGAGCAACTTGAGGTACAGAGACACTTACAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAAGCAGTGTTGGAAAAAGCACAAGAGACACTAGGAAGACAAAATATAGGTGCTGAGGGAGTTGAAGCAACCAAAGTTCAACTATCTGAACTAGCATCCAGAGTATCCCCTCAAAGCCTTGACTCTAGATTTTCAGAACTGAAAGAATTGCAAGTTTTGTGGCCTCAGCAAACACAAGAAGGCCAAGCCACTGATTGTTCAATGGGAAGTTTCTTAACCTACAGTGAGGAATCTCAAAGAGACAGAGAAACACATAACATGAACTTGAATTTGAGAGCCTATAATGGCCCTCCATTTTCAGTTTCAAAAGGGTCTGTGGAAGAGTCTATGCATTTAAAGCCTGATCACACATTGTGTGATGAAGTGAAGGAGAATTTGATGTTTCTTTCCTCATCAAGTGATAGTAAAGTAGTGAAGGGAGATTTTTTATCAGAAAGACCATCAAGCCTCTTGTCCATGAATGAAGGAGTTCAAGAAGAAGAAAATTTTGGTAGAACAACGGTTCCAAAGGAAGAAGGTTGGAAGGGAAGAAAGAGCACTGAAACTGGGAGAGCGCCGGTGAAATTGAACCATGAGAAGATTTCTCAAGATTATAGACTTGCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAGTTTGATTTGAATGGTTTCAGCTGGAATTGCTAG

Predicted protein sequences of Glyma.02g070900

Limit To All Plant Sequences

>Glyma.02g070900.1.p sequence-type=predicted peptide transcript=Glyma.02g070900.1 locus=Glyma.02g070900 ID=Glyma.02g070900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYYQQQQQAKNMHALRMHSPTERHMMMQGGNGSGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTMEAAARISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNIGAEGVEATKVQLSELASRVSPQSLDSRFSELKELQVLWPQQTQEGQATDCSMGSFLTYSEESQRDRETHNMNLNLRAYNGPPFSVSKGSVEESMHLKPDHTLCDEVKENLMFLSSSSDSKVVKGDFLSERPSSLLSMNEGVQEEENFGRTTVPKEEGWKGRKSTETGRAPVKLNHEKISQDYRLANFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC*

>Glyma.02g070900.2.p sequence-type=predicted peptide transcript=Glyma.02g070900.2 locus=Glyma.02g070900 ID=Glyma.02g070900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYYQQQQQAKNMHALRMHSPTERHMMMQGGNGSGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTMEAAARISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEQVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNIGAEGVEATKVQLSELASRVSPQSLDSRFSELKELQVLWPQQTQEGQATDCSMGSFLTYSEESQRDRETHNMNLNLRAYNGPPFSVSKGSVEESMHLKPDHTLCDEVKENLMFLSSSSDSKVVKGDFLSERPSSLLSMNEGVQEEENFGRTTVPKEEGWKGRKSTETGRAPVKLNHEKISQDYRLANFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC*

>Glyma.02g070900.3.p sequence-type=predicted peptide transcript=Glyma.02g070900.3 locus=Glyma.02g070900 ID=Glyma.02g070900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYYQQQQQAKNMHALRMHSPTERHMMMQGGNGSGDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTSNNKIASTMEAAARISEASGVQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNIGAEGVEATKVQLSELASRVSPQSLDSRFSELKELQVLWPQQTQEGQATDCSMGSFLTYSEESQRDRETHNMNLNLRAYNGPPFSVSKGSVEESMHLKPDHTLCDEVKENLMFLSSSSDSKVVKGDFLSERPSSLLSMNEGVQEEENFGRTTVPKEEGWKGRKSTETGRAPVKLNHEKISQDYRLANFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC*

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