SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g069200

Feature Type:gene_model
Chromosome:Gm02
Start:6099269
stop:6100696
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g069200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G65480.1AT PEBP (phosphatidylethanolamine-binding protein) family protein JGI N/AIEA
GO:0009909GO-bp regulation of flower development EnsemblGenomesN/AIEA
GO:0048573GO-bp photoperiodism, flowering EnsemblGenomesN/AIEA
GO:0008429GO-mf phosphatidylethanolamine binding EnsemblGenomesN/AIEA
PTHR11362Panther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN JGI N/AIEA
PF01161PFAM Phosphatidylethanolamine-binding protein JGI N/AIEA

Proteins Associated with Glyma.02g069200
LocusGene SymbolProtein Name
FT2C flowering locus T 2c
FT2c-N Flowering Locus T gene 2c

Expression Patterns of Glyma.02g069200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g069200 not represented in the dataset
Glyma.02g069200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g069200
ParalogEvidenceComments
Glyma.16g151000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g069200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.02g069200
>Glyma.02g069200.1 sequence-type=CDS polypeptide=Glyma.02g069200.1.p locus=Glyma.02g069200 ID=Glyma.02g069200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTAGTGGAAGTAGGGACCCTCTCGTTGTTGGGAGAGTGATTGGGGATGTTTTGGACCCTTTCGAATGTTCTATTCCTATGAGGGTCTCCTACAATAACAGAGATGTCAGCAACGGATGTGAATTCAAACCCTCACAAGTTGTCAACCAACCAAGGATAAACATCGGTGGTGATGACCTCAGGAACTTCTACACTTTGATCGCGGTTGATCCCGATGCACCTAGCCCAAGTGATCCAAATTTGAGAGAATACCTCCATTGGTTGGTGACTGATATCCCAGCAACAACGGGGCCAAGTTTCGGTACGTATGATGTTCTTCCATTTTTAAAACCTATAATTCTCTGTGCTTAA
Predicted protein sequences of Glyma.02g069200
>Glyma.02g069200.1.p sequence-type=predicted peptide transcript=Glyma.02g069200.1 locus=Glyma.02g069200 ID=Glyma.02g069200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSGSRDPLVVGRVIGDVLDPFECSIPMRVSYNNRDVSNGCEFKPSQVVNQPRINIGGDDLRNFYTLIAVDPDAPSPSDPNLREYLHWLVTDIPATTGPSFGTYDVLPFLKPIILCA*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo