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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G37360.1 | AT | cytochrome P450, family 81, subfamily D, polypeptide 2 | JGI | N/A | IEA |
| GO:0042343 | GO-bp | indole glucosinolate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0044550 | GO-bp | secondary metabolite biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0098542 | GO-bp | defense response to other organism | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0004497 | GO-mf | monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | EnsemblGenomes | N/A | IEA |
| GO:0016705 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | JGI | N/A | IEA |
| GO:0016709 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | EnsemblGenomes | N/A | IEA |
| GO:0020037 | GO-mf | heme binding | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| PF00067 | PFAM | Cytochrome P450 | JGI | N/A | IEA |
| PWY-2229 | SoyCyc9 | superpathway of pterocarpan biosynthesis (via formononetin) | Plant Metabolic Network | ISS | |
| PWY-2463 | SoyCyc9 | (-)-medicarpin biosynthesis | Plant Metabolic Network | ISS | |
| PWY-2464 | SoyCyc9 | (-)-maackiain biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5717 | SoyCyc9 | superpathway of formononetin derivative biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-65503 | SoyCyc9-rxn | 4'-methoxyisoflavone 2'-hydroxylase | Plant Metabolic Network | ISS |
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Glyma.02g067900 not represented in the dataset |
Glyma.02g067900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g149400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.02g067900.1 sequence-type=CDS polypeptide=Glyma.02g067900.1.p locus=Glyma.02g067900 ID=Glyma.02g067900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTTGAAGAAGGCAAAAGTTAAATTACACACTTATATAGGACAGGATCTCCTAGTAGATGAACATGACATTCCAAAAATCCATTATCTCCAAAATAGTATCTTTGAGACACTTTGTTTGCATCCTGCTGCTCCATTGTTGAGAGACCCTACACAGTTTAAGCCTGAGAGGTTTGAGAAGGAAAGTGAATCAAGCAAGCTACTTTCATTTGGGTTAGGGAGAAGGGCTTGCGCTGGAGGAAGCTTGGCACAACGCACAATGGGCTTAACTCCAGCCTTATTAATTCAATATTTTGAGTGGAAAAAGATTAGTGAAGAAGAAATTGATATGACTCGGAGAAGAAATTACTGTGTCAAAAAAAATTCATTTAGAAGCTATGTGCCAAATGTGTCCATCACTGGCCATCAAGAATGTTTTCTAACAGCTAGTGCTATTAAAATTGCACGCACACACGTGGTCCAACCCTTTGGATCCAGAATTTTCAACATTTCTCCAGCCGAAATAGCACGTCGTGCAAAGTTCACCATATTGGTGCTTCCATGTTTCCCATACTTGAATATAGTTGGTTTTCCCGTTAAAATTTCAAGTACAATTCCAAGACCATACACATCACTCTTTGCTTTGAACAAACTTGTACACAAGTACCCAGGATCAAAGGATCCCAAGGTTCCCAGTCGTACCATATCATGGTAA
>Glyma.02g067900.1.p sequence-type=predicted peptide transcript=Glyma.02g067900.1 locus=Glyma.02g067900 ID=Glyma.02g067900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MLKKAKVKLHTYIGQDLLVDEHDIPKIHYLQNSIFETLCLHPAAPLLRDPTQFKPERFEKESESSKLLSFGLGRRACAGGSLAQRTMGLTPALLIQYFEWKKISEEEIDMTRRRNYCVKKNSFRSYVPNVSITGHQECFLTASAIKIARTHVVQPFGSRIFNISPAEIARRAKFTILVLPCFPYLNIVGFPVKISSTIPRPYTSLFALNKLVHKYPGSKDPKVPSRTISW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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