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Report for Sequence Feature Glyma.02g065600

Feature Type:gene_model
Chromosome:Gm02
Start:5831075
stop:5842565
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g065600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10520.1AT DNA polymerase lambda (POLL) JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0071897GO-bp DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0097510GO-bp base-excision repair, AP site formation via deaminated base removal EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity JGI N/AIEA
GO:0030145GO-mf manganese ion binding EnsemblGenomesN/AIEA
GO:0034061GO-mf DNA polymerase activity EnsemblGenomesN/AIEA
GO:0051575GO-mf 5'-deoxyribose-5-phosphate lyase activity EnsemblGenomesN/AIEA
KOG2534 KOG DNA polymerase IV (family X) JGI N/AIEA
PTHR11276Panther DNA POLYMERASE TYPE-X FAMILY MEMBER JGI N/AIEA
PTHR11276:SF9Panther JGI N/AIEA
PF01909PFAM Nucleotidyltransferase domain JGI N/AIEA
PF10391PFAM Fingers domain of DNA polymerase lambda JGI N/AIEA

Expression Patterns of Glyma.02g065600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g065600 not represented in the dataset
Glyma.02g065600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g065600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g07270 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g065600
>Glyma.02g065600.2 sequence-type=transcript locus=Glyma.02g065600 ID=Glyma.02g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATCTTTCAATTTTCTCTTCACAGTTGACAGTCTCAAACAACAAAGAGCTGTTTATTTATATTTACATACGCGTCCAACATCCCCGTAAGTTTTAAACTGATGGATTGCACGCACTCAAGCTGCATAGCGACTAACAGTCACTGTAGAAGCCATTAATTAACGAAGAAAGTAAAACGCCGTGAAATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGTATGGCTTAAAAGAATGTTAACGGTTTCGTCCTGATTTGGTTGAATTCTCACTTATACTTTTGCCACTGCAGGGTGCAAAAGGTAGTGCAAGTTTGAAATTTAATACTGAAAAGGAGATATTTGATTTCCTAGACTTCCCTTGTCTTGAACCACATGAAAGAAATCTCTAAGTATAGAGATGGTTAGTAAGAAATCTCTTGCTAGCTCTCAGCATTCAACCTTGTAGAATATGTTGATGTATTTAGCAAATGGCTTTTTGGTTAGTAAGAAATCTCTTGCTGCTTTGTAAATAAATATACTCGCAGGATACAATTCACGTATCTGACTTAGTATATATTTTTGTACAAAAAATGGTTCTATAAGATGAGAACAGTTTTGACGTAGGATTTGTTTAAAATGCATTATAAGTTACCTTAA
Coding sequences of Glyma.02g065600
>Glyma.02g065600.1 sequence-type=CDS polypeptide=Glyma.02g065600.1.p locus=Glyma.02g065600 ID=Glyma.02g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGGTGCAAAAGGTAGTGCAAGTTTGAAATTTAATACTGAAAAGGAGATATTTGATTTCCTAGACTTCCCTTGTCTTGAACCACATGAAAGAAATCTCTAA

>Glyma.02g065600.2 sequence-type=CDS polypeptide=Glyma.02g065600.2.p locus=Glyma.02g065600 ID=Glyma.02g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCCAAAGAAGAAACCCGAGTCTGATCCTCATGGAATGTTCAGTGGCATGGTCGTGTTTTTGGTCCCCAAAGGAGTTCAATCCCGTCGATTCCAGATTTGGAAGGAAAGGTTGGTGCAAATGGGGGCTGTGATAGAGGAGCGCTTCTCCAAACGGGTCACTCATGTTTTTGCTATGCACTCAGATGCCCTTCTTCAGCAACTGGATAGGGAGCGTTTGTCACGTTTTAAAGGGAGAGTTCTCCTTTATCAATGGTTGGAGGACTGCTTGAAATCAGGGGAGATACTATCAGAGGATATGTATTTACTGAAGTTGGATTCTCAAGGTGAACATATACCTGAGAAGTCTTTGGACCCTGGACTGACTAATCAAAGGACTTCAAGCGATCTTCAACAATTGCTTAATAAAAAGAGCAAATTATCTACTGAGGATACAAAAATTGTAAAAAATGAAAGCCATGATGATGATGGAAAAGAAAAAGCGGTATTTTCATCAACAAGCACAATAAGCAGTCATGGTGAAGTTGACAGTTTAAGTTATGGAAACACAAGACAACAACACCTTGATGCTGAAAATGAGGCCTCATCCTTATCATACCATCCACCTGATCTAAACAAGAACATAACAGAGATATTTGGGAAACTTGTGAACATATATAGAGCATTGGGTGATGATCGGAGGTCCTTTAGCTATCACAAAGCTATTGCCGTGATTGAAAAGTTGCCATTCAAAATTGAAAGTACCGACCAGATAAACAATCTGCCATCTATTGGCAAATCAATGAAAGATCATGTTCAGGAGATAATGACTACTGGGAAGTTATCCAAATTGGAACACTTTGAAACTGATGAGAAGGTGCGGACAATATCGTTATTTGGAGAAGTATGGGGCATAGGCCCATCCACAGCACTGAAATTGTATGAGAAGGGACATCGTTCGTTAGATGATCTTAGGAATGATGACTCACTTACAAATGCACAGAAGTTAGGGTTAAAATACTTTGATGATATCGGGCAACGGATTCCACGCCACGAGGCTCAGGAGATGGAACACATTTTACAGAAAGTTGGGGAGGATGTTTTGCCTGGGGTTGTTATCATTTGTGGGGGATCATATCGACGTGGGAAAGCTACTTGCGGAGACATTGATATCATTATAACACATCCTGATGGAAAAAGCCACAAAGGATTTTTGCCAAAGTTCGTAAAGCATTTAAAGGATATGAATTTCCTGAGGGAGGACTTAATTTTCAGTAGTCACAGTGAAGAGGCTACTGATTCTGGTGTTGACACTTATTTTGGTTTTTGCACCTATCCTGGACGGGAGTTGCGGCATCGTATTGATTTAAAGGTGTACCCAAGAGACATATATGCTTTTGGACTTGTAGCTTGGACTGGAAACGATGTCTTGAATAGAAGGTTGAGGCTGCAAGCAGAATCTAAAGGATTCCGGCTTGACGATACAGGGCTATTTCCAGCTACTCAGGGTTCTGGCGGCAAACGGGTATGGCTTAAAAGAATGTTAACGGTTTCGTCCTGA
Predicted protein sequences of Glyma.02g065600
>Glyma.02g065600.1.p sequence-type=predicted peptide transcript=Glyma.02g065600.1 locus=Glyma.02g065600 ID=Glyma.02g065600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPKKKPESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTHVFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEKSLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEVDSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEVWGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQKVGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDLIFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLRLQAESKGFRLDDTGLFPATQGSGGKRGAKGSASLKFNTEKEIFDFLDFPCLEPHERNL*

>Glyma.02g065600.2.p sequence-type=predicted peptide transcript=Glyma.02g065600.2 locus=Glyma.02g065600 ID=Glyma.02g065600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPKKKPESDPHGMFSGMVVFLVPKGVQSRRFQIWKERLVQMGAVIEERFSKRVTHVFAMHSDALLQQLDRERLSRFKGRVLLYQWLEDCLKSGEILSEDMYLLKLDSQGEHIPEKSLDPGLTNQRTSSDLQQLLNKKSKLSTEDTKIVKNESHDDDGKEKAVFSSTSTISSHGEVDSLSYGNTRQQHLDAENEASSLSYHPPDLNKNITEIFGKLVNIYRALGDDRRSFSYHKAIAVIEKLPFKIESTDQINNLPSIGKSMKDHVQEIMTTGKLSKLEHFETDEKVRTISLFGEVWGIGPSTALKLYEKGHRSLDDLRNDDSLTNAQKLGLKYFDDIGQRIPRHEAQEMEHILQKVGEDVLPGVVIICGGSYRRGKATCGDIDIIITHPDGKSHKGFLPKFVKHLKDMNFLREDLIFSSHSEEATDSGVDTYFGFCTYPGRELRHRIDLKVYPRDIYAFGLVAWTGNDVLNRRLRLQAESKGFRLDDTGLFPATQGSGGKRVWLKRMLTVSS*






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