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Report for Sequence Feature Glyma.02g064500

Feature Type:gene_model
Chromosome:Gm02
Start:5771125
stop:5777921
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g064500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G07950.1AT rhomboid protein-related JGI N/AIEA
GO:0006890GO-bp retrograde vesicle-mediated transport, Golgi to ER EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0004252GO-mf serine-type endopeptidase activity JGI N/AIEA
KOG2890 KOG Predicted membrane protein JGI N/AIEA
PTHR13377Panther PLACENTAL PROTEIN 6 JGI N/AIEA
PF08551PFAM Eukaryotic integral membrane protein (DUF1751) JGI N/AIEA

Expression Patterns of Glyma.02g064500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g064500
ParalogEvidenceComments
Glyma.16g145700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g064500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g07160 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g064500
>Glyma.02g064500.2 sequence-type=transcript locus=Glyma.02g064500 ID=Glyma.02g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATAGTAACGTGTTAGTATTTTATTTGCATCATCACTGTTTGTGTAAATCTCAAGATCAGATCCTCATCTACCACCATTCCAGGTGTAGCCATCAAAACAACGTTTGTTTAACAAAACCCATTatcagatcagatccgatcagatcctcttcagattcggatcaCCGCCGAGTCCATGAGCACGCCAGCGCTTTCAGGGGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATCTATATATGGGGTAGTGGTCAGCACATTAAGTCTCCTGTTTATTGGGAAGCTGCTTGAACCAATATGGGGCTCCAGGGAATTCTTTAAATTTATCTTTGTGGTTAATCTTCTAACTTCAGTATGTTTATTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCTTTACCAGGTTCGGACTCAATTGAGGCATCCAGGAGACGAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGTTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTATAATTCCCCAGCGTTTGTAAATTTTGGATCAGTTCAGGCAATATGCACCTATTAGGAGTGATATTTTCAGAGGTCGTACAGTAATTAGAAATTTTTTGTTTAGGTCAAGGAAAATTTTAATGTGGTTTTGCCATGGACTATGATCTTTACAAAACCGAAGGTTTCTCTTTCTTTTGTCAGATAAATATATTTGACTTTCTTGTGTACTTTACACAAATACATAGAATCTAAAGAGTTTTTCAGTTGTTGTCTCCCATATAAAGACAAACTTTATAATGCAACTGCATGGATGAGGGAATTAGAATGTCATTAGATGTCCATGCAAGTTCTTGAGCTTGAAGAGATAGCAGCCCCAACGTTTTGAATATTGACAGCTTTGGGTTATGCAAGAAGTGGAATCATACACATCTGCCCCTGAAGTGTATTGCAGGGTGCAAGATTTTTCTACCTATTTTAATGTTATGGCTTTAGTTTCATT
Coding sequences of Glyma.02g064500
>Glyma.02g064500.1 sequence-type=CDS polypeptide=Glyma.02g064500.1.p locus=Glyma.02g064500 ID=Glyma.02g064500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCACGCCAGCGCTTTCAGGGGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATCTATATATGGGGTAGTGGTCAGCACATTAAGTCTCCTGTTTATTGGGAAGCTGCTTGAACCAATATGGGGCTCCAGGGAATTCTTTAAATTTATCTTTGTGGTTAATCTTCTAACTTCAGTATGTTTATTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCTTTACCAGGTTCGGACTCAATTGAGGCATCCAGGAGACGAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGTTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTATAA

>Glyma.02g064500.2 sequence-type=CDS polypeptide=Glyma.02g064500.2.p locus=Glyma.02g064500 ID=Glyma.02g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCACGCCAGCGCTTTCAGGGGGCACGGGCCTCTTCTCTGGATTCACGCGTTTATGCAAGGGCCTTGCGGTGGTGCTTGTTTGCGGTCACATTGCGGTTCAGTTTATCCCTTCAGCTGTTAACTATCTTGCTCTTATTCCCGCCAGGACAATCCCATTTGCCTGGAATCTCATTACAGCTGGATATGTTGAACAATCTATATATGGGGTAGTGGTCAGCACATTAAGTCTCCTGTTTATTGGGAAGCTGCTTGAACCAATATGGGGCTCCAGGGAATTCTTTAAATTTATCTTTGTGGTTAATCTTCTAACTTCAGTATGTTTATTCATCACTGCTATTGCCTTATACTACATTACAAGGCTGGAGACTTACCTTTACATGCCACTTTCTGGATTTCATGGAGTTGTATCTGGTTTCTTGGTTGGCATTAAGCAAATTATACCAGATCAAGAGCTTCCTTTCATTAAGATAAAAACAAAGTGGTTGCCATCTATCACTGTATTGCTTTCCATTGCTATTAGCTTCTGGACACTAGAGGCTACAGCATATCTTCCAACCATTATATCTGGCACGTATATAAGCTGGATTTATCTTAGATACTGGCAGAGGAAACCAGAAACTAAACATAGAGGTGATCTGAGTGAAGATTTTGCTTTCTCCACATTTTTCCCAGAATTTTTAAGACCAGTCATAGACCCTATCGCTTCAATATTTCATCGAATGCTCTGTGGAAGATATGATGCTTCTAATGATGGTCAAGGCAACAGTCTGGAAAGTGAGCCTTTACCAGGTTCGGACTCAATTGAGGCATCCAGGAGACGAGAAAGAGGTGCTCGAGCACTGGAAGAACGATTGGCTGCAGAGAGGTTGGCTGTTGCACGACGTGAGTTGCAAAGAGAGGCTGAGGAAAATGTATAA
Predicted protein sequences of Glyma.02g064500
>Glyma.02g064500.1.p sequence-type=predicted peptide transcript=Glyma.02g064500.1 locus=Glyma.02g064500 ID=Glyma.02g064500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTPALSGGTGLFSGFTRLCKGLAVVLVCGHIAVQFIPSAVNYLALIPARTIPFAWNLITAGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYITRLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWLPSITVLLSIAISFWTLEATAYLPTIISGTYISWIYLRYWQRKPETKHRGDLSEDFAFSTFFPEFLRPVIDPIASIFHRMLCGRYDASNDGQGNSLESEPLPGSDSIEASRRRERGARALEERLAAERLAVARRELQREAEENV*

>Glyma.02g064500.2.p sequence-type=predicted peptide transcript=Glyma.02g064500.2 locus=Glyma.02g064500 ID=Glyma.02g064500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTPALSGGTGLFSGFTRLCKGLAVVLVCGHIAVQFIPSAVNYLALIPARTIPFAWNLITAGYVEQSIYGVVVSTLSLLFIGKLLEPIWGSREFFKFIFVVNLLTSVCLFITAIALYYITRLETYLYMPLSGFHGVVSGFLVGIKQIIPDQELPFIKIKTKWLPSITVLLSIAISFWTLEATAYLPTIISGTYISWIYLRYWQRKPETKHRGDLSEDFAFSTFFPEFLRPVIDPIASIFHRMLCGRYDASNDGQGNSLESEPLPGSDSIEASRRRERGARALEERLAAERLAVARRELQREAEENV*






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