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Report for Sequence Feature Glyma.02g062400

Feature Type:gene_model
Chromosome:Gm02
Start:5618666
stop:5623683
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g062400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66960.1AT Prolyl oligopeptidase family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004252GO-mf serine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004252GO-mf serine-type endopeptidase activity JGI N/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity JGI N/AIEA
GO:0070008GO-mf serine-type exopeptidase activity EnsemblGenomesN/AIEA
GO:0070008GO-mf serine-type exopeptidase activity JGI N/AIEA
KOG2237 KOG Predicted serine protease JGI N/AIEA
PTHR11757Panther PROTEASE FAMILY S9A OLIGOPEPTIDASE JGI N/AIEA
PTHR11757:SF3Panther PROLYL ENDOPEPTIDASE-LIKE JGI N/AIEA
PF00326PFAM Prolyl oligopeptidase family JGI N/AIEA
PF02897PFAM Prolyl oligopeptidase, N-terminal beta-propeller domain JGI N/AIEA

Expression Patterns of Glyma.02g062400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g062400
ParalogEvidenceComments
Glyma.16g144700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g062400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g06940 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g062400
>Glyma.02g062400.1 sequence-type=CDS polypeptide=Glyma.02g062400.1.p locus=Glyma.02g062400 ID=Glyma.02g062400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGCCCTCTGTTCCGTTTGGCTCAAGTAGCCCGGCGCCACTACAAGGCGTCGTCGCCACCACCACCGAGCCCACCGAAGGCCCCAAAGAAGCCGCAGAAGTTCAGCTTCGACGGCGCAACGTGGGAGGACCCATACAGCTGGATGTCGCAGCTGAACGACAAGGTGGCGATGCGGCACATGGACGTGTGCGTGGAGCAAGAGGAGAAGTACGCCGAGGCCGTCATGTCGGACTCCGATAACCTCCTGAACAAGCTCCACTTTGAGATGGCCTCTCGCATGCCCTTCGACCTCTCCACCCCTCCCCTCCGCTGGGGCCCCTGGCTCTACTACCGCCGCGCCGAAGAAGCCAAACCCTACCCCGTCCTCTGCCGCCGGTTGGCTAGCTTGTACGAAGACTTCATTTCACATAAGTACCCCCCCGCGGGTTTCGATTTCACTACGGGAAAGACCATTGAGCAGAAGCTCCTTGATTACAATCAAGAAGCCCAGAGATTTGGAGGTTATGCTTATGAGGAACTGTCTGAGGTTTCGCCGAATCATCAGTTTCTTGCATATACTATGTATGATAAAGAAAATGACTACTTCAAATTATCCGTGAGAAATTTGAATTCGGGTTCGTTGTGCAGTAAGCCTCAGGCAGATCGAGTTTCCAACTTGGCATGGGCCAAGGATGGACAGGCTCTGCTTTACGTTGTGACAGATAAGAAAATGAGGCCTTACCGTATCTACTACAGTCTGATTGGATCAACTGATGAAGATGTTTTGCTTTTGGAAGAGTCAGATGAAAGTGTTCACGTTAATATTAGGCACACAAAAGACTTTCTATTTGTGACTGTAAATACATTCTCTACCACATCATCAAAGGTCTTTCTAATAAATGCAGCTGACCTGTTGTCTGGCTTGAAACTAGTTTGGGAGTGTGACGCTCTAGCTCACTGCACAATTGAACATCACCGAGGTTACCTTTATTTATTTACAGATGCTCCCAAAGGTGGTCGATCAGTTGATTGTCATTATCTTCTTTTTAGTCCAGTGGATGATCCTTCAAGTACAAGAAAATGGGAGGAGGTATTAGTCGATGACCCAGGTTTGATTATTGAGGATATTGATTTTAGTGATAAATACTTAGCACTCATTGTAAGGGAAGGTCGAAAAGTTCAGCTTTGTTCAGTTGGACTGCCATTGCCCTTTGGGAAGGGAGCAGTTAAACTGAGGAAGCTGGACCTACAGTACTTGCCCATTCCAAGACATGTTTGCCAAATTACGCCTGGACCAAACTATGACTTTTTCTCATCTGTCATGCGCTTTATAATATCATCACCTGTGATGCCAGATGCTGTGGTTGATTATGACCTGGCCACAGGTAAGTGGAACATCATTCAACAGCAAAATGTGCTTCATGACAGGACAAGAATACTGTATGGTAAAAATTCTGCAAGTATTAGTATGGAGTCCTCAAATTCAAAACACTCCAATCCTGTGAATGTTAACTCTGAAGATGACCACTTATGGAATGACCTGTCTGAGTTTTATGCCTGTGAACAATATGAGGTCCCTTCATTTGATGGAGTTTTGATTCCTTTGACTATTGTTTTTGCACGTAACAATAAGATAGAAGCTAAAAAACCTGGGATATTGCATGGACATGGAGCTTATGGTGAATTACTTGACAAACGGTGGCGCAGTGAACTAAAAAGCCTCCTGGATCGAGGTTGGGTTGTTGCCTATGCCGATGTTAGAGGTGGAGGTGGTTTTGGTAAGAAATGGCATAATGACGGAAGACGTACAAAGAAACATAATTCAATCAATGATTACATCTCTTGTGCCAAATTCCTCATTGAAAAAGATATTGTGCATGAAAACAAATTGGCTGGTTGGGGATATAGTGCTGGAGGACTTTTGGTTGCTTCTGCTATTAATCGTTCTCCAGATTTATTTCGTGCTGCAGTCTTGAAGGTTCCCTTTTTAGATGCAACCAACACTCTTCTGTATCCCATCTTGCCACTTATAGCTGCTGACTATGAAGAGTTTGGCTACCCTGGTGACCTTGATGATTTTCTTGCAATTCGAGAATATTCTCCATATGACAATATACGAAAGGATGTTCTTTATCCAGCTGTATTAGTAACCTCATCTTTCAATACACGATTTGGGGTATGGGAAGCAGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAGTTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTAGTGGAGGAAAACCGTTATTTGCAGTCCAAGGAATCAGCATTAGAGGCCACATTTCTCATTAAGATGATGGAATATTAG
Predicted protein sequences of Glyma.02g062400
>Glyma.02g062400.1.p sequence-type=predicted peptide transcript=Glyma.02g062400.1 locus=Glyma.02g062400 ID=Glyma.02g062400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRPLFRLAQVARRHYKASSPPPPSPPKAPKKPQKFSFDGATWEDPYSWMSQLNDKVAMRHMDVCVEQEEKYAEAVMSDSDNLLNKLHFEMASRMPFDLSTPPLRWGPWLYYRRAEEAKPYPVLCRRLASLYEDFISHKYPPAGFDFTTGKTIEQKLLDYNQEAQRFGGYAYEELSEVSPNHQFLAYTMYDKENDYFKLSVRNLNSGSLCSKPQADRVSNLAWAKDGQALLYVVTDKKMRPYRIYYSLIGSTDEDVLLLEESDESVHVNIRHTKDFLFVTVNTFSTTSSKVFLINAADLLSGLKLVWECDALAHCTIEHHRGYLYLFTDAPKGGRSVDCHYLLFSPVDDPSSTRKWEEVLVDDPGLIIEDIDFSDKYLALIVREGRKVQLCSVGLPLPFGKGAVKLRKLDLQYLPIPRHVCQITPGPNYDFFSSVMRFIISSPVMPDAVVDYDLATGKWNIIQQQNVLHDRTRILYGKNSASISMESSNSKHSNPVNVNSEDDHLWNDLSEFYACEQYEVPSFDGVLIPLTIVFARNNKIEAKKPGILHGHGAYGELLDKRWRSELKSLLDRGWVVAYADVRGGGGFGKKWHNDGRRTKKHNSINDYISCAKFLIEKDIVHENKLAGWGYSAGGLLVASAINRSPDLFRAAVLKVPFLDATNTLLYPILPLIAADYEEFGYPGDLDDFLAIREYSPYDNIRKDVLYPAVLVTSSFNTRFGVWEAAKWVARVRDLSVYDPKRPILLNLTTDLVEENRYLQSKESALEATFLIKMMEY*






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