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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G50760.1 | AT | galacturonosyltransferase-like 2 | JGI | N/A | IEA |
| GO:0000271 | GO-bp | polysaccharide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | JGI | N/A | IEA |
| PTHR13778 | Panther | GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN | JGI | N/A | IEA |
| PF01501 | PFAM | Glycosyl transferase family 8 | JGI | N/A | IEA |
| PWY-1061 | SoyCyc9 | homogalacturonan biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-65287 | SoyCyc9-rxn | polygalacturonate 4-α-galacturonosyltransferase | Plant Metabolic Network | ISS |
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Glyma.02g059400 not represented in the dataset |
Glyma.02g059400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g06640 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g059400.1 sequence-type=CDS polypeptide=Glyma.02g059400.1.p locus=Glyma.02g059400 ID=Glyma.02g059400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAATGAAGTCTTTCAAGTTTTGGCTTCTTCAAACGTTTTATATCTCTCCCTCTCTCTCACTGTCATTACATACTCAAATCCCACATCGCTCAACACCAAAGGCGCAATGGCACCACCTTCATTCTTCTTCGTTTTCTTTTTCATCTTAATATTCTCATGCACCAGCGCCACCACCACCCAACAACAGCGTTTCAAAGAAGCTCCAAAATTCTACAACTCCCCCACGTGCGCCACCCTCCGCCACCACCCGAACCCAAACCACACGTGCCCCGACAACGCTGTCCACGTGGCAATGACCCTCGACGTTTCCTACCTCCGAGGTTCCATGGCCGCAATCCTCTCCGTTCTGCAACACACCTCATGCCCCGAAAATGTGATCTTCCACTTCGTCACCGCAGCTTCTAAATCTTCCTCCGCCGCAAAGCTAAACCAAACGCTAACCACCTCCTTCCCCTACCTGAATTTCCAAATCTACCCCTTCGACGACGACGCCGTTTCGCGCCTCATCTCCACCTCCATCCGCTCAGCACTGGATTGCCCCCTCAACTACGCAAGAAGCTACCTCTCCACCCTCCTCCCTCCCTGCGTCGCGAAAATCGTCTACCTCGACTCGGACTTGATCCTCGTCGACGACATCTCGAAGCTCGCGGAGACACCGCTCTCTGGCACGGCGGTGCTCGCCGCGCCGGAGTACTGCTCCGCGAACTTCTCGGCGTACTTCACGCCCTCGTTCTGGTCCAACCCCTCGCTGTCGCTTGTCCTCGCTAACCGCCGGAGGCCACCGTGCTACTTCAACACGGGCGTAATGGTGATCGACCTCCGGCAATGGCGCGAGGGCGAGTACACGACCGAGATCGAGGAGTGGATGGAGCTGCAGAAGAGGATGCGGATCTACGAGCTTGGCTCACTGCCGCCGTTCCTGCTGGTGTTCGCCGGGAGAATTGCGGCGGTGGACCACCGGTGGAACCAGCACGGGCTCGGCGGAGATAACTTCCGCGGGCTTTGCCGAGACCTTCACCCCGGGCCCGTGAGCCTGCTGCATTGGAGTGGCAAAGGGAAGCCGTGGGCCAGGCTTGACGCCGGCAGGCCTTGCCCTTTGGACGCATTGTGGGCTCCCTACGATCTGCTCGAGACTCGTTTCGCTGCTCTTCAAGCGTAA
>Glyma.02g059400.1.p sequence-type=predicted peptide transcript=Glyma.02g059400.1 locus=Glyma.02g059400 ID=Glyma.02g059400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MNEVFQVLASSNVLYLSLSLTVITYSNPTSLNTKGAMAPPSFFFVFFFILIFSCTSATTTQQQRFKEAPKFYNSPTCATLRHHPNPNHTCPDNAVHVAMTLDVSYLRGSMAAILSVLQHTSCPENVIFHFVTAASKSSSAAKLNQTLTTSFPYLNFQIYPFDDDAVSRLISTSIRSALDCPLNYARSYLSTLLPPCVAKIVYLDSDLILVDDISKLAETPLSGTAVLAAPEYCSANFSAYFTPSFWSNPSLSLVLANRRRPPCYFNTGVMVIDLRQWREGEYTTEIEEWMELQKRMRIYELGSLPPFLLVFAGRIAAVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDAGRPCPLDALWAPYDLLETRFAALQA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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