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Report for Sequence Feature Glyma.02g057000

Feature Type:gene_model
Chromosome:Gm02
Start:5114679
stop:5115781
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g057000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49560.1AT Putative methyltransferase family protein JGI N/AIEA
KOG2793 KOG Putative N2,N2-dimethylguanosine tRNA methyltransferase JGI N/AIEA
PTHR14614Panther HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN JGI N/AIEA
PF10294PFAM Putative methyltransferase JGI N/AIEA

Expression Patterns of Glyma.02g057000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g057000 not represented in the dataset
Glyma.02g057000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g057000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g06360 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g057000
>Glyma.02g057000.1 sequence-type=CDS polypeptide=Glyma.02g057000.1.p locus=Glyma.02g057000 ID=Glyma.02g057000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACTCAAGAAGACGAAGAAGACGAGATAATTAACCCCTTCACAATGCTCCTAATCCACGAAGAAGACAAACCAAGCGTCTCCGCTACCCTCCCCGCGGCTGCACCGAACCACCACCTGCTCCAGCACCACCCCCTCCGTTCGATCCAATCAACGGTCGCCATTCGCCAGCTCCCTTCCGAGGGCCTCTCCTTCCAGCTCTGGCCCGCCGCCACCTCCCTCGTCTCCCTCCTCGACCTCCACCGCGAAAACCCTCCCTCCGCCAGCCCCCTCTCAGCCGCGCTCCACGGCCGCCGCCGCATCATCGAGCTCGGCTCCGGCACCGGCCTCGTCGGAATCGCCGCCGCCGCCACCCTCGGCGCCCACGTGACTCTCACGGACCTTCCTCACGTGGTTCCCAATCTCCGATTCAATGCGGACGCCAACGCCGCGGTTGTGGGGCCCACCGGAGGGGTAATAACCGTCGCGCCGCTCCGTTGGGGCCACGCTGCTGACGTGGAAGCGATTGGGCGGGAGTTTGATCTCGTTCTGGCGTCGGATGTGGTGTATCACGATCACCTGTACGAGCCACTGCTCGAAACGCTGCGTTTAATGATGCTAAGTGAAAGGAATGGGAAGATGGTGTTTGTGATGGCTCACATGAGGAGGTGGAAGAAGGAGTCTGCGTTTTTTAAGAAGGCGAGGAAGCACTTCAACGTCGACGTTTTGCACACTGACACGCCTTGTGATGGGTCTAGGGTTGGTGTTGTTGTTTACCGTTTTGTTGCCAAGGGATAA
Predicted protein sequences of Glyma.02g057000
>Glyma.02g057000.1.p sequence-type=predicted peptide transcript=Glyma.02g057000.1 locus=Glyma.02g057000 ID=Glyma.02g057000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATQEDEEDEIINPFTMLLIHEEDKPSVSATLPAAAPNHHLLQHHPLRSIQSTVAIRQLPSEGLSFQLWPAATSLVSLLDLHRENPPSASPLSAALHGRRRIIELGSGTGLVGIAAAATLGAHVTLTDLPHVVPNLRFNADANAAVVGPTGGVITVAPLRWGHAADVEAIGREFDLVLASDVVYHDHLYEPLLETLRLMMLSERNGKMVFVMAHMRRWKKESAFFKKARKHFNVDVLHTDTPCDGSRVGVVVYRFVAKG*






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