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Report for Sequence Feature Glyma.02g055400

Feature Type:gene_model
Chromosome:Gm02
Start:5001550
stop:5004517
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g055400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18290.1AT anaphase promoting complex 10 JGI N/AIEA
GO:0007049GO-bp cell cycle EnsemblGenomesN/AIEA
GO:0031145GO-bp anaphase-promoting complex-dependent catabolic process EnsemblGenomesN/AIEA
GO:0051301GO-bp cell division EnsemblGenomesN/AIEA
GO:0070979GO-bp protein K11-linked ubiquitination EnsemblGenomesN/AIEA
GO:1904668GO-bp positive regulation of ubiquitin protein ligase activity EnsemblGenomesN/AIEA
GO:0005680GO-cc anaphase-promoting complex EnsemblGenomesN/AIEA
GO:0061630GO-mf ubiquitin protein ligase activity EnsemblGenomesN/AIEA
KOG3437 KOG Anaphase-promoting complex (APC), subunit 10 JGI N/AIEA
PTHR12936Panther ANAPHASE-PROMOTING COMPLEX 10 JGI N/AIEA
PF03256PFAM Anaphase-promoting complex, subunit 10 (APC10) JGI N/AIEA

Expression Patterns of Glyma.02g055400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g055400 not represented in the dataset
Glyma.02g055400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g055400
ParalogEvidenceComments
Glyma.16g138200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g055400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g06190 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g055400
>Glyma.02g055400.2 sequence-type=transcript locus=Glyma.02g055400 ID=Glyma.02g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTACTATTGGTACTTAAAAAAAGAAAACTCCCATCTTTTTACAAAAAGTAGTCAAAACTTGAAATCAAATCAGGAGCGGGGGAAAAAGAAAAGAGAGAGAAGTAGGGTTCGAAAATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGAGAGTTTATGGAAGGAATTGATGAAGCCACCTAGTGTTAAATCAAAGGATGCTGCCCACTAAGTGATTATATCATCTGGAAGGTCTGAAACCAAATCACTGCAGACCGAAATGTCAAAAATACATTTCACTTCAATATTCTTCTTGAAAATTGTCATCAGTAAATGTGACCATCAGTGATTCAGTACCCTTTGTGTCTGGCTAGTATTTATAATTTGTTTAGATTCAGGGTCTGACTTCCTTGAAGAGTTCTATAATTATTAATTAACAAAATGATATGTGCATTGTGTGAATTTCTATTTCCTCTTTCTTATCATCATAGTTTCTATGAAATTGGCACTAACGCCATGGTATTGGTTTATCTAGTTCTACTGCTGAAGAATATAATCTACAGACGTGTTTTTCTTTTTCATTCAAGGATTCTGGTGTGGTTAATTAGTTGGTTAGTTAAAAGATCTCATTTAACCAAATGAATATTTC

>Glyma.02g055400.3 sequence-type=transcript locus=Glyma.02g055400 ID=Glyma.02g055400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCCTTTTTTCTTTTTTGTTCTTAAATTCATTTTCGGTTCTTCCCCATTTGCATTTCTTCCGTGGAACCAGTAGTCAAAACTTGAAATCAAATCAGGAGCGGGGGAAAAAGAAAAGAGAGAGAAGTAGGGTTCGAAAATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGAGAGTTTATGGAAGGAATTGATGAAGCCACCTAGTGTTAAATCAAAGGATGCTGCCCACTAAGTGATTATATCATCTGGAAGGTCTGAAACCAAATCACTGCAGACCGAAATGTCAAAAATACATTTCACTTCAATATTCTTCTTGAAAATTGTCATCAGTAAATGTGACCATCAGTGATTCAGTACCCTTTGTGTCTGGCTAGTATTTATAATTTGTTTAGATTCAGGGTCTGACTTCCTTGAAGAGTTCTATAATTATTAATTAACAAAATGATATGTGCATTGTGTGAATTTCTATTTCCTCTTTCTTATCATCATAGTTTCTATGAAATTGGCACTAACGCCATGGTATTGGTTTATCTAGTTCTACTGCTGAAGAATATAATCTACAGACGTGTTTTTCTTTTTCATTCAAGGATTCTGGTGTGGTTAATTAGTTGGTTAGTTAAAAGATCTCATTTAACCAAATGAATATTTC
Coding sequences of Glyma.02g055400
>Glyma.02g055400.1 sequence-type=CDS polypeptide=Glyma.02g055400.1.p locus=Glyma.02g055400 ID=Glyma.02g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA

>Glyma.02g055400.2 sequence-type=CDS polypeptide=Glyma.02g055400.2.p locus=Glyma.02g055400 ID=Glyma.02g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA

>Glyma.02g055400.3 sequence-type=CDS polypeptide=Glyma.02g055400.3.p locus=Glyma.02g055400 ID=Glyma.02g055400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCAGAATCATCAGAGGGCGAAGAAGAAACCAAGTTAAGCGGAGGGAGCTTATTGCTGACCGTTGACGACGACTTAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAATCCGACGGAGGGCAACCCCATTTGGTCAACATTCAGTTTCAAAAGAAAGTTAGACTTCAGTTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCTTATCTGGAGTTGATCCTAGGGATACCTTTGTGAACACTTTCATGTTGCAAATTGCTGTGTTGTCAAACCATCTCAATGGAAGGGATACTCACGTGCGGCAGATCAAAGTTTACGGGCCTCGACCGAACCCTATCCCACATCAGCCATTCCAATTTACTTCAAGGGAGTTTATCACCTACTCTTCTATAAGATGA
Predicted protein sequences of Glyma.02g055400
>Glyma.02g055400.1.p sequence-type=predicted peptide transcript=Glyma.02g055400.1 locus=Glyma.02g055400 ID=Glyma.02g055400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*

>Glyma.02g055400.2.p sequence-type=predicted peptide transcript=Glyma.02g055400.2 locus=Glyma.02g055400 ID=Glyma.02g055400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*

>Glyma.02g055400.3.p sequence-type=predicted peptide transcript=Glyma.02g055400.3 locus=Glyma.02g055400 ID=Glyma.02g055400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAESSEGEEETKLSGGSLLLTVDDDLTEMGKKAAWSVSSCKPGNGVSSLRDDNLETYWQSDGGQPHLVNIQFQKKVRLQLIVLYVDFKLDESYTPSKVSIRAGDGFHNLKEIKTVELVKPTGWVYLSLSGVDPRDTFVNTFMLQIAVLSNHLNGRDTHVRQIKVYGPRPNPIPHQPFQFTSREFITYSSIR*






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