Glyma.02g054200

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Report for Sequence Feature Glyma.02g054200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4915245
stop:	4917897
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g054200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19640.1	AT	jasmonic acid carboxyl methyltransferase	JGI	N/A	IEA
GO:0032259	GO-bp	methylation	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
PF03492	PFAM	SAM dependent carboxyl methyltransferase	JGI	N/A	IEA
PWY-4203	SoyCyc9	volatile benzenoid biosynthesis I (ester formation)	Plant Metabolic Network		ISS
GN7V-44565	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Proteins Associated with Glyma.02g054200

Locus	Gene Symbol	Protein Name
	SABATH2	salicylic acid methyl transferase-like protein
	SAMT1.02	salicylic acid methyltransferase

Expression Patterns of Glyma.02g054200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g054200 not represented in the dataset	Glyma.02g054200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g054200

Paralog	Evidence	Comments
Glyma.16g134600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g054200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g06070	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g054200

Limit To All Plant Sequences

>Glyma.02g054200.2 sequence-type=transcript locus=Glyma.02g054200 ID=Glyma.02g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAGTAAAAGAACGAGCTAGAAAGTGAAGTAGAAATATAACAAGAAAAGAGAATGGAAGTAGCACAGGTACTCCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCCTTGTTCAGCCCATAAGAGAGGAAGCCATAAGAAGCCTCTATTGCAGCACACACCCCAGAAGCTTGGCAATTGCAGATTTGGGTTGCTCTTCTGGACCAAACACTTTATTTGTTGTGTCTGAATTCATAAAAATTGTGGAGAAGCTTTGCCGAGAGCTGAACCACAAATCTCCAGAATACAAAGTCTTTCTGAATGATCTCCCTGGGAATGACTTCAACAACATCTTCAAGTCTCTTGACAGCTTCAAAGAGAAATTGTGTGATGAAATGGAAAGTGGGATCGGTCCATGCTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGGTTCCTGAGGGTGTAGACAACAACAAGGGCAATGTTTACATAGGCAGTACGAGCCCCAAAAATGTTGTGAGAGCTTACTATGAGCAATTTCAGAGAGATTTCTCTCTTTTTCTCAAGTGTCGTGCAGAGGAATTGGTTGAAGGAGGACGCATGGTTCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGGGAATCATAAGAGAAGAGCAATTAGATACTTTTAACATCCCTCAATACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGATCATTCGCCATCAATCGTCTAGAGGTTTCTGAGGTGAATTGGAATGCTCTCGATGAGTGGAATGCTCTAGACTTTGAATCTGAAAGGTCTGAATCACTTAGTGATGGTGGATACAATGTGGCACAGTGCATGAGGGCTGTGGCAGAACCTATGCTGATTAGCCACTTTGGTGAAGCTATCATTGAAGAGGTTTTTTGCCGCTACCAGCAAATCTTGGCTGAACGTATGTCCAAGGAGAAAACCAAGTTCATCAATGTTACCATATTATTGACTAGAAAAGCATAAGCAAGAAGTTTGCATCTATATATGGTTTCTCAAAATGGATTGTTGTAGTTGTTGTGAGTTGTGACTGTTTGCTTGTTTGTGTTTTTTTCTAGCAATTAACTGGCAAAATGTTAAGTTGGAGAAAAAGAAAACTAGTATGATGCTGTACCTTTGGTAGTAAGTTTCTTTTTAATATTATTATGTAATAAAATTATTTATGTGAGACTATGATAATCAGTATTTGGTGTACTATATTTCATATTTTC

Coding sequences of Glyma.02g054200

Limit To All Plant Sequences

>Glyma.02g054200.1 sequence-type=CDS polypeptide=Glyma.02g054200.1.p locus=Glyma.02g054200 ID=Glyma.02g054200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTAGCACAGGTACTCCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCCTTGTTCAGCAAAAGGTGATTTGTTTGACAAAGCCCATAAGAGAGGAAGCCATAAGAAGCCTCTATTGCAGCACACACCCCAGAAGCTTGGCAATTGCAGATTTGGGTTGCTCTTCTGGACCAAACACTTTATTTGTTGTGTCTGAATTCATAAAAATTGTGGAGAAGCTTTGCCGAGAGCTGAACCACAAATCTCCAGAATACAAAGTCTTTCTGAATGATCTCCCTGGGAATGACTTCAACAACATCTTCAAGTCTCTTGACAGCTTCAAAGAGAAATTGTGTGATGAAATGGAAAGTGGGATCGGTCCATGCTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGGTTCCTGAGGGTGTAGACAACAACAAGGGCAATGTTTACATAGGCAGTACGAGCCCCAAAAATGTTGTGAGAGCTTACTATGAGCAATTTCAGAGAGATTTCTCTCTTTTTCTCAAGTGTCGTGCAGAGGAATTGGTTGAAGGAGGACGCATGGTTCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGGGAATCATAAGAGAAGAGCAATTAGATACTTTTAACATCCCTCAATACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGATCATTCGCCATCAATCGTCTAGAGGTTTCTGAGGTGAATTGGAATGCTCTCGATGAGTGGAATGCTCTAGACTTTGAATCTGAAAGGTCTGAATCACTTAGTGATGGTGGATACAATGTGGCACAGTGCATGAGGGCTGTGGCAGAACCTATGCTGATTAGCCACTTTGGTGAAGCTATCATTGAAGAGGTTTTTTGCCGCTACCAGCAAATCTTGGCTGAACGTATGTCCAAGGAGAAAACCAAGTTCATCAATGTTACCATATTATTGACTAGAAAAGCATAA

>Glyma.02g054200.2 sequence-type=CDS polypeptide=Glyma.02g054200.2.p locus=Glyma.02g054200 ID=Glyma.02g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGTAGCACAGGTACTCCACATGAACGGTGGCGTTGGAGACGCAAGCTATGCAAACAACTCCCTTGTTCAGCCCATAAGAGAGGAAGCCATAAGAAGCCTCTATTGCAGCACACACCCCAGAAGCTTGGCAATTGCAGATTTGGGTTGCTCTTCTGGACCAAACACTTTATTTGTTGTGTCTGAATTCATAAAAATTGTGGAGAAGCTTTGCCGAGAGCTGAACCACAAATCTCCAGAATACAAAGTCTTTCTGAATGATCTCCCTGGGAATGACTTCAACAACATCTTCAAGTCTCTTGACAGCTTCAAAGAGAAATTGTGTGATGAAATGGAAAGTGGGATCGGTCCATGCTACTTCTCGGGTGTTCCCGGTTCTTTCTATGGAAGGGTTTTCCCATATCAAAGTCTTCATTTTGTCCATTCCTCATACAGCCTTCAATGGCTATCTAAGGTTCCTGAGGGTGTAGACAACAACAAGGGCAATGTTTACATAGGCAGTACGAGCCCCAAAAATGTTGTGAGAGCTTACTATGAGCAATTTCAGAGAGATTTCTCTCTTTTTCTCAAGTGTCGTGCAGAGGAATTGGTTGAAGGAGGACGCATGGTTCTCACATTTTTGGGAAGAAGAAGCGATGATCCATCTAGCAAGGATGGTTGCTACATTTGGGAGCTTTTGGCTACTGCTCTTAGTGATATGGTCTTGCAGGGAATCATAAGAGAAGAGCAATTAGATACTTTTAACATCCCTCAATACACTCCATCCCCATCTGAAGTGAAATTGGAAGTTCTTAAAGAAGGATCATTCGCCATCAATCGTCTAGAGGTTTCTGAGGTGAATTGGAATGCTCTCGATGAGTGGAATGCTCTAGACTTTGAATCTGAAAGGTCTGAATCACTTAGTGATGGTGGATACAATGTGGCACAGTGCATGAGGGCTGTGGCAGAACCTATGCTGATTAGCCACTTTGGTGAAGCTATCATTGAAGAGGTTTTTTGCCGCTACCAGCAAATCTTGGCTGAACGTATGTCCAAGGAGAAAACCAAGTTCATCAATGTTACCATATTATTGACTAGAAAAGCATAA

Predicted protein sequences of Glyma.02g054200

Limit To All Plant Sequences

>Glyma.02g054200.1.p sequence-type=predicted peptide transcript=Glyma.02g054200.1 locus=Glyma.02g054200 ID=Glyma.02g054200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVAQVLHMNGGVGDASYANNSLVQQKVICLTKPIREEAIRSLYCSTHPRSLAIADLGCSSGPNTLFVVSEFIKIVEKLCRELNHKSPEYKVFLNDLPGNDFNNIFKSLDSFKEKLCDEMESGIGPCYFSGVPGSFYGRVFPYQSLHFVHSSYSLQWLSKVPEGVDNNKGNVYIGSTSPKNVVRAYYEQFQRDFSLFLKCRAEELVEGGRMVLTFLGRRSDDPSSKDGCYIWELLATALSDMVLQGIIREEQLDTFNIPQYTPSPSEVKLEVLKEGSFAINRLEVSEVNWNALDEWNALDFESERSESLSDGGYNVAQCMRAVAEPMLISHFGEAIIEEVFCRYQQILAERMSKEKTKFINVTILLTRKA*

>Glyma.02g054200.2.p sequence-type=predicted peptide transcript=Glyma.02g054200.2 locus=Glyma.02g054200 ID=Glyma.02g054200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVAQVLHMNGGVGDASYANNSLVQPIREEAIRSLYCSTHPRSLAIADLGCSSGPNTLFVVSEFIKIVEKLCRELNHKSPEYKVFLNDLPGNDFNNIFKSLDSFKEKLCDEMESGIGPCYFSGVPGSFYGRVFPYQSLHFVHSSYSLQWLSKVPEGVDNNKGNVYIGSTSPKNVVRAYYEQFQRDFSLFLKCRAEELVEGGRMVLTFLGRRSDDPSSKDGCYIWELLATALSDMVLQGIIREEQLDTFNIPQYTPSPSEVKLEVLKEGSFAINRLEVSEVNWNALDEWNALDFESERSESLSDGGYNVAQCMRAVAEPMLISHFGEAIIEEVFCRYQQILAERMSKEKTKFINVTILLTRKA*

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