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Report for Sequence Feature Glyma.02g050500

Feature Type:gene_model
Chromosome:Gm02
Start:4592556
stop:4595677
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g050500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G36195.1AT Serine carboxypeptidase S28 family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0008236GO-mf serine-type peptidase activity EnsemblGenomesN/AIEA
GO:0008236GO-mf serine-type peptidase activity JGI N/AIEA
GO:0008239GO-mf dipeptidyl-peptidase activity EnsemblGenomesN/AIEA
PTHR11010Panther PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED JGI N/AIEA
PTHR11010:SF2Panther JGI N/AIEA
PF05577PFAM Serine carboxypeptidase S28 JGI N/AIEA

Expression Patterns of Glyma.02g050500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g050500 not represented in the dataset
Glyma.02g050500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g050500
ParalogEvidenceComments
Glyma.16g130900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g050500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g05661 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g050500
>Glyma.02g050500.1 sequence-type=CDS polypeptide=Glyma.02g050500.1.p locus=Glyma.02g050500 ID=Glyma.02g050500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGCTTAATCTAACATTCAGATATAGATTAAGGTCAGCAATGGACTCCATAAATGCAAAGCTTAATAGAACAAAAATTGAAAACCCCTGGTTCATTTTTAGTGATTTGTATTCTGGAGCACCCAGTGCATGGTTCCGTCTTAAGTTTCCCCATTTAACATGTGGAAGTCTGGCTAGTTCTGCAGTTGTTCTTGCTGTTTATAACTACACAGAATTTGATCAGCAGATTGGTGAGTCGGCAGGTCCTGAATGTAAAGAAGCGCTGCAAGAAATTACTCAACTCATTGAACACAAACTTGCAACCAGTGGAAAGGAACTAAAGGCCTCTTTTGATGCAGCTAATCTTGAAATAGATGGAGACTTTTTTATATGCTGCTGCTATAGGAGTTTTCAATATGGAAATCCAGATAAAGTATGCAAGCCTCTTGTTGAAGCAAAGAAGGCTGGAGAGGACTTGGTGAATGCTTATGCCAAATATGTCAAAGAGTACTACATTGGAACTTTTGGTGTTGATGTAAAGACTTATGATCAGAAGTACTTGATAAGAAATGCTATGAGTGAGGACAATTCTGCTCGATTATGGTGGTTTCAAGTTTGCACTGAAGTTGCATACTTTCAGTGGCTCCCTCAAATGATAGTATTCGCTCCTCAAAAGTTGACACAAAGCAAGTTCTTATCCAAACAAACTTCATCTCCTCATAGTAATGCGAAAAACTGCACCTCTCCTGATGCAGTTCACAAAGTATGGCAAAAGATTTTAGATCATATATATGGACTTGTGGTTATCTGA
Predicted protein sequences of Glyma.02g050500
>Glyma.02g050500.1.p sequence-type=predicted peptide transcript=Glyma.02g050500.1 locus=Glyma.02g050500 ID=Glyma.02g050500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRLNLTFRYRLRSAMDSINAKLNRTKIENPWFIFSDLYSGAPSAWFRLKFPHLTCGSLASSAVVLAVYNYTEFDQQIGESAGPECKEALQEITQLIEHKLATSGKELKASFDAANLEIDGDFFICCCYRSFQYGNPDKVCKPLVEAKKAGEDLVNAYAKYVKEYYIGTFGVDVKTYDQKYLIRNAMSEDNSARLWWFQVCTEVAYFQWLPQMIVFAPQKLTQSKFLSKQTSSPHSNAKNCTSPDAVHKVWQKILDHIYGLVVI*






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