Glyma.02g049000

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Report for Sequence Feature Glyma.02g049000

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4464177
stop:	4467693
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.02g049000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19940.1	AT	glycosyl hydrolase 9B5	JGI	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005975	GO-bp	carbohydrate metabolic process	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	EnsemblGenomes	N/A	IEA
GO:0004553	GO-mf	hydrolase activity, hydrolyzing O-glycosyl compounds	JGI	N/A	IEA
PTHR22298	Panther	ENDO-1,4-BETA-GLUCANASE	JGI	N/A	IEA
PF00759	PFAM	Glycosyl hydrolase family 9	JGI	N/A	IEA
GN7V-50580	SoyCyc9-rxn	cellulase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.02g049000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g049000 not represented in the dataset	Glyma.02g049000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.02g049000

Paralog	Evidence	Comments
Glyma.16g129100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g049000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma02g05510	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.02g049000

Limit To All Plant Sequences

>Glyma.02g049000.2 sequence-type=transcript locus=Glyma.02g049000 ID=Glyma.02g049000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAGAACCTCAAATCTTTGTCTGCATCTTTTAAGTGGCACCATTCTCCGGCAGCACAATCACCCATTACGCTGGTAAGCTGGAGAATAAGAGGGTTTGGTGGAGAGGGGATTCGGGGCTACGAGATGGGAGTGAAGAGAATTTGGATTTATCGAAAGGAATGTATGATGCTGGTGACCACATGAAATTTGGTTTCCCTTTGGCTTTCACTGCAACCGTGTTGTCTTGGGCGATTCTTGAATATGGAGGTCGCATGGATGCGGTGAAGCAGCTACACTATGCACTTGATTCGCTGAAGTGGATCACGGATTATCTTGTCAATGCACACCCTTTTCCTGAAGTGCTCTACATTCAGGTGGGGGATCCTGAGGTGGATCATAATTGCTGGGAAAGGCCTGAAGACATGAAAGAAAAAAGACCACTCACTCAAGTTAATTCATCTTTTCCAGGAACAGAAGTTGCGGCAGAAACTGCAGCTGCATTGGCCTCAGCATCTCTTGTTTTTAAGGAGATCGATTTCGCTTACTCTAGGATTCTCCTACGACATGCTCAACAGCTGTTTACTTTTGCTGATGCATATAGAGTTTCCTACAGTGTCAGCATCCCTCAAGTGGGGAAATACTATAACTCATCTGGTTATGGAGACGAACTCTTATGGGCAGGTACCTGGCTCTATCATGCAACTAAGGATCCATCATATCTAAACTATGTGACAGGGCAGAATGAGAAAGCATTTGGTAGTTTAGGAAGTCTATCATGGTTAAGTTGGGATGATAAACATGCTGCAACTCAGGTTCTTTTGTCCAGAGTGAATTTCTTTGGTGAAAGTAACATCCCAGATGCGGAGAATCTCGACCTTCAGATGTACAGAGAAACTGCTGAAATCCTCATGTGCAAGCTTCTACCTGATTCACCAACAGCCACCGCCAACAGAACTGAAAGTGGGCTGATATGGGTGGTACCATGGAACTCTTTGCAACATTCAGTAGCGTCTGCATTCTTAGCTGTTCTTTATAGCGACTACATGCTGACATCTCAAACTGAAATACTATATTGTAGTGGGAAATTGTATAAGCCAGTAGATCTTCGCAAATTTGCCATTTCTCAGGCAGATTATGTTTTAGGTGAAAATCCTATGAAGATGAGTTATCTTGTGGGATATGGAACTCAATACCCCAAATACATACATCATAGAGGGTCTTCCATTCCAGTTAATGCTACAACTGGTTGCAAAGATGGATTCAAGTGGTTTGACTCACCTCACCCTAATCCAAATGTAGCATTTGGAGCACTAGTAGGTGGTCCTTTCTTTGATGAGACATATAATGATTTCAGGAACAACTCAATGCAGGCTGAACCAACCACTTACAGTAGTGCCCTCTTTGTTGCTCTCTTATCTGGCTTGGTTGCCAGTTCCTCCGTAGCGTGGTCTTtttagaatttatatgtattctttattatcaataaatgactttttttatttaacaaatgttagttgttaattgttaGAATTTATATGTATGATCCAATTTTGTTGTGACATATGTAAATACCCCCTAATGTATATTACCTTCCTAGATAGCAATAGTTTTGGAATAACCC

Coding sequences of Glyma.02g049000

Limit To All Plant Sequences

>Glyma.02g049000.1 sequence-type=CDS polypeptide=Glyma.02g049000.1.p locus=Glyma.02g049000 ID=Glyma.02g049000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACACAAGGTTAATGATAAAGAACCCAACAAAAAGCACTACGTTGGTGCCTTGTGTTGGTGGTTAACAGTGTCCATCATCGCAGTCCTCGTAGTAGTTGCTGGTGTTCTTTCTCTAATAACCAAGTTTAAGTTTGGTCACTCTAATTCACCTGAATTCACTTCTCACCCCACCAACGTTGTTCAGAAATATGCTTCAGCTCTTGAATTGGCCTTGCAATTTTTTGACGTCCAGAAATCTGGTAAGCTGGAGAATAAGAGGGTTTGGTGGAGAGGGGATTCGGGGCTACGAGATGGGAGTGAAGAGAATTTGGATTTATCGAAAGGAATGTATGATGCTGGTGACCACATGAAATTTGGTTTCCCTTTGGCTTTCACTGCAACCGTGTTGTCTTGGGCGATTCTTGAATATGGAGGTCGCATGGATGCGGTGAAGCAGCTACACTATGCACTTGATTCGCTGAAGTGGATCACGGATTATCTTGTCAATGCACACCCTTTTCCTGAAGTGCTCTACATTCAGGTGGGGGATCCTGAGGTGGATCATAATTGCTGGGAAAGGCCTGAAGACATGAAAGAAAAAAGACCACTCACTCAAGTTAATTCATCTTTTCCAGGAACAGAAGTTGCGGCAGAAACTGCAGCTGCATTGGCCTCAGCATCTCTTGTTTTTAAGGAGATCGATTTCGCTTACTCTAGGATTCTCCTACGACATGCTCAACAGCTGTTTACTTTTGCTGATGCATATAGAGTTTCCTACAGTGTCAGCATCCCTCAAGTGGGGAAATACTATAACTCATCTGGTTATGGAGACGAACTCTTATGGGCAGGTACCTGGCTCTATCATGCAACTAAGGATCCATCATATCTAAACTATGTGACAGGGCAGAATGAGAAAGCATTTGGTAGTTTAGGAAGTCTATCATGGTTAAGTTGGGATGATAAACATGCTGCAACTCAGGTTCTTTTGTCCAGAGTGAATTTCTTTGGTGAAAGTAACATCCCAGATGCGGAGAATCTCGACCTTCAGATGTACAGAGAAACTGCTGAAATCCTCATGTGCAAGCTTCTACCTGATTCACCAACAGCCACCGCCAACAGAACTGAAAGTGGGCTGATATGGGTGGTACCATGGAACTCTTTGCAACATTCAGTAGCGTCTGCATTCTTAGCTGTTCTTTATAGCGACTACATGCTGACATCTCAAACTGAAATACTATATTGTAGTGGGAAATTGTATAAGCCAGTAGATCTTCGCAAATTTGCCATTTCTCAGGCAGATTATGTTTTAGGTGAAAATCCTATGAAGATGAGTTATCTTGTGGGATATGGAACTCAATACCCCAAATACATACATCATAGAGGGTCTTCCATTCCAGTTAATGCTACAACTGGTTGCAAAGATGGATTCAAGTGGTTTGACTCACCTCACCCTAATCCAAATGTAGCATTTGGAGCACTAGTAGGTGGTCCTTTCTTTGATGAGACATATAATGATTTCAGGAACAACTCAATGCAGGCTGAACCAACCACTTACAGTAGTGCCCTCTTTGTTGCTCTCTTATCTGGCTTGGTTGCCAGTTCCTCCGTAGCGTGGTCTTTTTAG

>Glyma.02g049000.2 sequence-type=CDS polypeptide=Glyma.02g049000.2.p locus=Glyma.02g049000 ID=Glyma.02g049000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATGATGCTGGTGACCACATGAAATTTGGTTTCCCTTTGGCTTTCACTGCAACCGTGTTGTCTTGGGCGATTCTTGAATATGGAGGTCGCATGGATGCGGTGAAGCAGCTACACTATGCACTTGATTCGCTGAAGTGGATCACGGATTATCTTGTCAATGCACACCCTTTTCCTGAAGTGCTCTACATTCAGGTGGGGGATCCTGAGGTGGATCATAATTGCTGGGAAAGGCCTGAAGACATGAAAGAAAAAAGACCACTCACTCAAGTTAATTCATCTTTTCCAGGAACAGAAGTTGCGGCAGAAACTGCAGCTGCATTGGCCTCAGCATCTCTTGTTTTTAAGGAGATCGATTTCGCTTACTCTAGGATTCTCCTACGACATGCTCAACAGCTGTTTACTTTTGCTGATGCATATAGAGTTTCCTACAGTGTCAGCATCCCTCAAGTGGGGAAATACTATAACTCATCTGGTTATGGAGACGAACTCTTATGGGCAGGTACCTGGCTCTATCATGCAACTAAGGATCCATCATATCTAAACTATGTGACAGGGCAGAATGAGAAAGCATTTGGTAGTTTAGGAAGTCTATCATGGTTAAGTTGGGATGATAAACATGCTGCAACTCAGGTTCTTTTGTCCAGAGTGAATTTCTTTGGTGAAAGTAACATCCCAGATGCGGAGAATCTCGACCTTCAGATGTACAGAGAAACTGCTGAAATCCTCATGTGCAAGCTTCTACCTGATTCACCAACAGCCACCGCCAACAGAACTGAAAGTGGGCTGATATGGGTGGTACCATGGAACTCTTTGCAACATTCAGTAGCGTCTGCATTCTTAGCTGTTCTTTATAGCGACTACATGCTGACATCTCAAACTGAAATACTATATTGTAGTGGGAAATTGTATAAGCCAGTAGATCTTCGCAAATTTGCCATTTCTCAGGCAGATTATGTTTTAGGTGAAAATCCTATGAAGATGAGTTATCTTGTGGGATATGGAACTCAATACCCCAAATACATACATCATAGAGGGTCTTCCATTCCAGTTAATGCTACAACTGGTTGCAAAGATGGATTCAAGTGGTTTGACTCACCTCACCCTAATCCAAATGTAGCATTTGGAGCACTAGTAGGTGGTCCTTTCTTTGATGAGACATATAATGATTTCAGGAACAACTCAATGCAGGCTGAACCAACCACTTACAGTAGTGCCCTCTTTGTTGCTCTCTTATCTGGCTTGGTTGCCAGTTCCTCCGTAGCGTGGTCTTTTTAG

Predicted protein sequences of Glyma.02g049000

Limit To All Plant Sequences

>Glyma.02g049000.1.p sequence-type=predicted peptide transcript=Glyma.02g049000.1 locus=Glyma.02g049000 ID=Glyma.02g049000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEHKVNDKEPNKKHYVGALCWWLTVSIIAVLVVVAGVLSLITKFKFGHSNSPEFTSHPTNVVQKYASALELALQFFDVQKSGKLENKRVWWRGDSGLRDGSEENLDLSKGMYDAGDHMKFGFPLAFTATVLSWAILEYGGRMDAVKQLHYALDSLKWITDYLVNAHPFPEVLYIQVGDPEVDHNCWERPEDMKEKRPLTQVNSSFPGTEVAAETAAALASASLVFKEIDFAYSRILLRHAQQLFTFADAYRVSYSVSIPQVGKYYNSSGYGDELLWAGTWLYHATKDPSYLNYVTGQNEKAFGSLGSLSWLSWDDKHAATQVLLSRVNFFGESNIPDAENLDLQMYRETAEILMCKLLPDSPTATANRTESGLIWVVPWNSLQHSVASAFLAVLYSDYMLTSQTEILYCSGKLYKPVDLRKFAISQADYVLGENPMKMSYLVGYGTQYPKYIHHRGSSIPVNATTGCKDGFKWFDSPHPNPNVAFGALVGGPFFDETYNDFRNNSMQAEPTTYSSALFVALLSGLVASSSVAWSF*

>Glyma.02g049000.2.p sequence-type=predicted peptide transcript=Glyma.02g049000.2 locus=Glyma.02g049000 ID=Glyma.02g049000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYDAGDHMKFGFPLAFTATVLSWAILEYGGRMDAVKQLHYALDSLKWITDYLVNAHPFPEVLYIQVGDPEVDHNCWERPEDMKEKRPLTQVNSSFPGTEVAAETAAALASASLVFKEIDFAYSRILLRHAQQLFTFADAYRVSYSVSIPQVGKYYNSSGYGDELLWAGTWLYHATKDPSYLNYVTGQNEKAFGSLGSLSWLSWDDKHAATQVLLSRVNFFGESNIPDAENLDLQMYRETAEILMCKLLPDSPTATANRTESGLIWVVPWNSLQHSVASAFLAVLYSDYMLTSQTEILYCSGKLYKPVDLRKFAISQADYVLGENPMKMSYLVGYGTQYPKYIHHRGSSIPVNATTGCKDGFKWFDSPHPNPNVAFGALVGGPFFDETYNDFRNNSMQAEPTTYSSALFVALLSGLVASSSVAWSF*

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