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Report for Sequence Feature Glyma.02g047800

Feature Type:gene_model
Chromosome:Gm02
Start:4396176
stop:4398689
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g047800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07090.1AT Ribosomal protein S4 (RPS4A) family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0019843GO-mf rRNA binding EnsemblGenomesN/AIEA
KOG0378 KOG 40S ribosomal protein S4 JGI N/AIEA
PTHR11581Panther 30S/40S RIBOSOMAL PROTEIN S4 JGI N/AIEA
PF00467PFAM KOW motif JGI N/AIEA
PF00900PFAM Ribosomal family S4e JGI N/AIEA
PF01479PFAM S4 domain JGI N/AIEA
PF08071PFAM RS4NT (NUC023) domain JGI N/AIEA

Expression Patterns of Glyma.02g047800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g047800 not represented in the dataset
Glyma.02g047800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g047800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g05370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g047800
>Glyma.02g047800.1 sequence-type=CDS polypeptide=Glyma.02g047800.1.p locus=Glyma.02g047800 ID=Glyma.02g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTGCTCCTAAGCCCTCATCTGGACCACACAAATCCAGGGAATGCCTGCCACTCATACTCATTTTGCGAAACCGGCTGAAGTATGCTCTGACATACCGTGAAGTCATTGCTATTCTGATGCAGCGACATGTCCTTGTTGATGGCAAAGTCAGGACAGACAAGACATATCCTGCTGGTTTCATGGATGTTGTATCAATCCCTAAAACAAATGAGAACTTCCGCCTGCTGTATGACACCAAAGGCCGATTCCGTCTTCACTCAGTCATAGATGACGAGGCTAAGTTCAAGCTTTGCAAAGTTCGCTCAGTGCAGTTTGGGCAAAAAGGTATCCCATACTTGAACACCTACGATGGTCGCACTATCCGCTACCCAGACCCTCTCATCAGAGCTAATGACACCATTAAGTTGGATTTGGAGGAGAACAAGATTGTCGATTTCATCAAGTTTGATGTTGGGAATGTAGTCATGGTGACAGGTGGAAGGAATAGGGGTCGTGTTGGAGTGATCAAGAACAGAGAGAAGCATAAGGGAAGCTTTGAGACTATCCATGTTCAGGATGCCACTGGCCACGAGTTTGCAACTCGTATGGGCAATGTGTTCACCATTGGCAAGGGAACAAAACCATGGATATCTCTTCCCAAGGGTAAAGGTATTAAACTATCAATCATTGAGGAAGCTAGGAAAAGGATTGCCGCCCAACAAGCAACTGCTGCTTAA
Predicted protein sequences of Glyma.02g047800
>Glyma.02g047800.1.p sequence-type=predicted peptide transcript=Glyma.02g047800.1 locus=Glyma.02g047800 ID=Glyma.02g047800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVIDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWISLPKGKGIKLSIIEEARKRIAAQQATAA*






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