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Report for Sequence Feature Glyma.02g042500

Feature Type:gene_model
Chromosome:Gm02
Start:3995112
stop:3998421
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g042500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12500.1AT basic chitinase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process EnsemblGenomesN/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0004568GO-mf chitinase activity JGI N/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
KOG4742 KOG Predicted chitinase JGI N/AIEA
PTHR22595Panther CHITINASE-RELATED JGI N/AIEA
PTHR22595:SF11Panther JGI N/AIEA
PF00182PFAM Chitinase class I JGI N/AIEA
PF00187PFAM Chitin recognition protein JGI N/AIEA
PWY-6902SoyCyc9 chitin degradation II (Vibrio) Plant Metabolic Network ISS
GN7V-40841SoyCyc9-rxn chitinase Plant Metabolic Network ISS

Proteins Associated with Glyma.02g042500
LocusGene SymbolProtein Name
CHIA1 chitinase class I

Expression Patterns of Glyma.02g042500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g042500 not represented in the dataset
Glyma.02g042500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g042500
ParalogEvidenceComments
Glyma.16g119200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g042500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g04820 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g042500
>Glyma.02g042500.2 sequence-type=transcript locus=Glyma.02g042500 ID=Glyma.02g042500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATACAATTCACATCATACACCGTTTCTTTCACTTCACAAAAATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTAGCGATCATAGGGATTTGAATTTGACTTGGAAAATGAACGAGCTGTTCATGTTAATTTTACTTTCTAGATTAGATGCATGTTAAAAGTATCCTCTAGAAACTCTGTTCATAGTCCTCCAAGAGCACATCCTGGCGTAATGGATCACTACCGGAAAGAACTTTCCATTGACTAGCCAAGTCAAGTCAAGGGAAATATCATAATCAAATGGATAGATGTGGGAGACTAAGATCTGAAAGATATGTATTGTATTTCCTCCGAGGGATCGAAAGCCTAGCCTCTTTTGTCAATGGTCAGAAAGTAACGCAAACAACACCACATCCTACAAGGTT

>Glyma.02g042500.3 sequence-type=transcript locus=Glyma.02g042500 ID=Glyma.02g042500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATACAATTCACATCATACACCGTTTCTTTCACTTCACAAAAATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAAGCAAATTGCTCACATATATCATCCATATAGAGAATAAATAGTATGTAATAAAGGATCTACCATGATCTTACATGTACTGGGAAACTTGTTTCTAAAGAAGTTCCCCTTATCTTGATTAAATAAGAAACTTTAATATTTTACCACCTTTTATGAC
Coding sequences of Glyma.02g042500
>Glyma.02g042500.1 sequence-type=CDS polypeptide=Glyma.02g042500.1.p locus=Glyma.02g042500 ID=Glyma.02g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAA

>Glyma.02g042500.2 sequence-type=CDS polypeptide=Glyma.02g042500.2.p locus=Glyma.02g042500 ID=Glyma.02g042500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTAG

>Glyma.02g042500.3 sequence-type=CDS polypeptide=Glyma.02g042500.3.p locus=Glyma.02g042500 ID=Glyma.02g042500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAA
Predicted protein sequences of Glyma.02g042500
>Glyma.02g042500.1.p sequence-type=predicted peptide transcript=Glyma.02g042500.1 locus=Glyma.02g042500 ID=Glyma.02g042500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRRYCQMMGISPGDNLDCNNQRPFA*

>Glyma.02g042500.2.p sequence-type=predicted peptide transcript=Glyma.02g042500.2 locus=Glyma.02g042500 ID=Glyma.02g042500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRR*

>Glyma.02g042500.3.p sequence-type=predicted peptide transcript=Glyma.02g042500.3 locus=Glyma.02g042500 ID=Glyma.02g042500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRRYCQMMGISPGDNLDCNNQRPFA*






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