SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g028600

Feature Type:gene_model
Chromosome:Gm02
Start:2586542
stop:2588021
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.02g028600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G59970.1AT JGI N/AIEA
3.4.24.7EC interstitial collagenase JGI N/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0031012GO-cc extracellular matrix JGI N/AIEA
GO:0004222GO-mf metalloendopeptidase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
PTHR10201PantherFam MATRIX METALLOPROTEINASE JGI N/AIEA
PF00413Pfam Matrixin JGI N/AIEA
PF01471Pfam Putative peptidoglycan binding domain JGI N/AIEA

Gene model name correspondences to Glyma.02g028600 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.02g028600
>Glyma.02g028600.1 sequence-type=CDS polypeptide=Glyma.02g028600.1.p locus=Glyma.02g028600 id=Glyma.02g028600.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAAACCGTACCTACGTCCAATATTCCTATTATTCCTTATCCTTCTCGACCAATCCACTTCGGCGAGTGCTTCTAAGAGTAGGTTTATAGAATTCTTTTCAAAATTAAAGAATTCTTTTAATCCTAAGTCTGAAGAACTCAAATCAAAAGATATAAAGAAGCTCCCGAGCGTCGAATTTTTGAAGAAGAAACATGACGGAGTTAAGGACTTCTCTCAAGAAGCTAACCTGAAAATACCAACCTGGATAGGAAGAATAATACGAAACCGGAAAGGAAAGCCGTCCCAGAAACCAAAGCACCCTCCCCCACCGCCAGACTACCGTGTACAACTAAAGTCCGATCCCCCAGCGCCAAACGCACCACCGAAGCAAATCAATATTAAGGGCCTGTCCGTCGTCAAAGATTACTTATCTGACTACGGCTACATTGAATCCTCTGGGCCATTTACCGATTCTTTCGACCAGGAAATAATATCAGCCATTAAGACCTACCAGAATTTTTCCAATCTTCAAGTTACCGGCGGCCTGAACAAACAGCTTATTCAGCAAATGTTGTCCATACGATGCGGTGTCCCCGACGTTAACTTCGACTACAACTTCACCGACGACAACATTTCCTATCCCAAAGCCGGACACCGCTGGTTCCCAAACAGAAACCTCACATACGGTTTTCTTCCCGAAAACCAAATCCCAGACAACATGACTAAGGTGTTCAGAGATTCCTTTGCGAGGTGGGCCCAAGCCTCGGGGACTTTGAGTCTCAGGGAGACAACCTACGACAACGCCGACATCCAGGTAGGGTTCTACAACTTCACTAACTCGAGGATTGAAGTGTATGGTGGCAGCACTATATTTTTGCAACCGGATTCTAGTAAGAAAGGGGTGGTACTTCTGGACGGTAACATGGGCTGGTTACTTCCAAGTGAAAACGCCACACTGTCTAAAGATGATGGAGTTTTGGACTTGGAGACTGTGGCGATGCACCAGATAGGGCATCTACTTGGACTTGATCACTCTCACAAAGAGGACTCTGTTATGTATCCTTACATATTGTCATCACAGTCAGAGCAACGAAAGGTGCAGCTTTCCAATTCTGACAAGGCCAACATTCACCTTCAGTTTGCTAAGCATGATTAG
Predicted protein sequences of Glyma.02g028600
>Glyma.02g028600.1.p sequence-type=predicted peptide transcript=Glyma.02g028600.1 locus=Glyma.02g028600 id=Glyma.02g028600.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MKPYLRPIFLLFLILLDQSTSASASKSRFIEFFSKLKNSFNPKSEELKSKDIKKLPSVEFLKKKHDGVKDFSQEANLKIPTWIGRIIRNRKGKPSQKPKHPPPPPDYRVQLKSDPPAPNAPPKQINIKGLSVVKDYLSDYGYIESSGPFTDSFDQEIISAIKTYQNFSNLQVTGGLNKQLIQQMLSIRCGVPDVNFDYNFTDDNISYPKAGHRWFPNRNLTYGFLPENQIPDNMTKVFRDSFARWAQASGTLSLRETTYDNADIQVGFYNFTNSRIEVYGGSTIFLQPDSSKKGVVLLDGNMGWLLPSENATLSKDDGVLDLETVAMHQIGHLLGLDHSHKEDSVMYPYILSSQSEQRKVQLSNSDKANIHLQFAKHD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo