SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g025100

Feature Type:gene_model
Chromosome:Gm02
Start:2227392
stop:2233681
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g025100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10385.1AT Vps51/Vps67 family (components of vesicular transport) protein JGI N/AIEA
GO:0001927GO-bp exocyst assembly EnsemblGenomesN/AIEA
GO:0006887GO-bp exocytosis EnsemblGenomesN/AIEA
GO:0051601GO-bp exocyst localization EnsemblGenomesN/AIEA
GO:0000145GO-cc exocyst EnsemblGenomesN/AIEA
KOG2215 KOG Exocyst complex subunit JGI N/AIEA
PTHR21426Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21426:SF4Panther JGI N/AIEA
PF08700PFAM Vps51/Vps67 JGI N/AIEA

Expression Patterns of Glyma.02g025100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g025100
ParalogEvidenceComments
Glyma.01g039700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g025100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g02910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g025100
>Glyma.02g025100.1 sequence-type=CDS polypeptide=Glyma.02g025100.1.p locus=Glyma.02g025100 ID=Glyma.02g025100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCAGTCACCATTCACGAGTCAGAGAGGATCTGTGTCATCCAGCATTGGAAACTCTGCAGAACTTGATGCCAATCTCACACTCAGCGATAAGCTCAAGGTTTTCAAAAGCTCCACCTTTGATCCCAATAACTATGTCGCCTCCAAATCACGCAGCATGAACGAGAAGGAGATAAGACACTTGTGCGCTTATCTTGTTGATCTGAAGAAGGCTTCAGCAGAAGAAATGCGTAAAAGTGTTCTTGCTAATTATTCAGCCTTCATACGTACATCCAAAGAGATTTCAGATCTTGAGGGAGAGCTGGTTTCCATGAGAAATCTTCTAAACACTCAGGCTGCTGTAGTTCATGGTTTAGCAGAAGGATGCATGCTTAGTTCCATGATTAGTGGAAATGAAGATTCAGACATGGATGATTTACTAGATGAAAAAACAGATATATCCAATACAGAAAAATGGCTAATAGGATATTTAGAAACCCTTGAAGTTCTATTAGCAGAGAAAAGAGTGGATGAAGCTATGATTGCTTTGGACGAAGGAGAAAAAATGGCAAAAGAAATTAGTGAAGGGAAAACTTTAAGTTCAAGTTTATTCCAGGCATTGCAAGATGCCATTACTGAACACAGACAAAAACTGGCTGATCAGCTAGCAGACACTATCTGCCAGCCATCAACTCGCAGTGCAGAGATTCGATCAACAGCATTGGCATTGAAAAATCTAGGGGATGGTCCTCGTGCTCATACATTACTACTAAATTCTCACCAAGAAACATTGCAGCGTAACATGAAAAACCTTCAATCCAGCAATTCTGGTGGAGTTGGGGCATTTACTGCTACCCTTTCACAACTCGTCTTTTCAACCATTTCACAAGCAGCATCAGATTCTTTGTCAGTGTTTGCCGAAGAAGAACCTGCGTATACATCTGAGCTAGTAACTTGGGCCGTTAAACAGGTTGAGAAATTTGCTGTTCTCCTTAAGAAATGCATTCTTGCCTCTACAGCTGCTGCAGGAGGTTTGAGAGTTGCATCTGAATGTGTTCATGTTTGCATGAGTCACTGTTATCAGCTAGAGGCTAGTGGGCTGGCTCTTTCCCCAATCTTAACAAAATATTTTAGGCCCTTTGTCAAGCAAGCACTGAGCACAAATTTGAAAAGAATTGAACAAAGTAGTTCAGCACTAGCTGCCGCAGATGATTGGTTTCTTGCTTATACACCAACCAGCAGCAGGCATTCTGGGCTACCTCCATCTTCTTCTCACAGTAACCTAAGTTTCCAACCAAAGCTTTCAAGCAGTGCTCACAAGTTCAACTCCATGGTTCAAGAGCTATTTGAAGATGTAGGACCTCTTGAAATACTACAATTGGACATTCTTGCAGTTGAAGGCCTTATACAAGTGTTCAACTTTTATGTCAATTTGCTAATAAACGCATTGCCAGGTTCAGTGGTAAATGAGAATCTGGAAGGGCACAAAATTGTTAAGATTGCAGAGGCCGAAGAACAGCAGATAGCATTGCTGGCTAATGCAATGTTGCTGGCAGATGAGCTGCTCCCGCGTGCTGTCATCAAGCTTTCAAATAGCACCATAGGTGATGACTCTCAGAGGAGAGGATCAGACAAACAGCGTGAACTGAAGAAAAGGCTCCAACGGGAAGTCGATCGCTTGCGGGACAGCTTTTGCCGGCAACATGCTCTTGAACTTATCTTCACAGAAGAAGGAGAAGCTCGTCTAAATGCATTAATATATTTGGGAATGGATGGTAATGTAGAACAACCTGAATGGTTTCCTTCTCCTATTTTTCAGGAGATTTTTGCAAAGCTTACCCAAGTGGCAAGCATTGCAGCAGATCTGTTTGTGGGAAGGGAAAGATTTGCCACTGTTTTATTGATGAGACTCGCAGAAACAGTGATTCTGTGGCTTTCTGATGACCAAACCTTCTGGGAAGAGGTTGAGACAGGATCAACGCCTTTAGGTCCCATTGGCCTTCAACAGCTTTATTTAGATATGCAATTTGTGATGATATTTTCATCCCAAGGCCGTTACTTATCTCGTCATTTGCATCAAGCTATTAAAAACATTATTGAAAGGGCTATTAATGCTGTTGCCGCTACAGGTCTAGATCCCAACAGTGTCTTGCCCGAGGATGAATGGTTTGTTGAAGTTTGCGAAATAGCTATTAAGATGTTAACTGGGAGAGCAGTCTTTGACAATGTAGAGGGTGATGTTGCTAGCCCCACTTCATCTGTCCAAACATAA
Predicted protein sequences of Glyma.02g025100
>Glyma.02g025100.1.p sequence-type=predicted peptide transcript=Glyma.02g025100.1 locus=Glyma.02g025100 ID=Glyma.02g025100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDQSPFTSQRGSVSSSIGNSAELDANLTLSDKLKVFKSSTFDPNNYVASKSRSMNEKEIRHLCAYLVDLKKASAEEMRKSVLANYSAFIRTSKEISDLEGELVSMRNLLNTQAAVVHGLAEGCMLSSMISGNEDSDMDDLLDEKTDISNTEKWLIGYLETLEVLLAEKRVDEAMIALDEGEKMAKEISEGKTLSSSLFQALQDAITEHRQKLADQLADTICQPSTRSAEIRSTALALKNLGDGPRAHTLLLNSHQETLQRNMKNLQSSNSGGVGAFTATLSQLVFSTISQAASDSLSVFAEEEPAYTSELVTWAVKQVEKFAVLLKKCILASTAAAGGLRVASECVHVCMSHCYQLEASGLALSPILTKYFRPFVKQALSTNLKRIEQSSSALAAADDWFLAYTPTSSRHSGLPPSSSHSNLSFQPKLSSSAHKFNSMVQELFEDVGPLEILQLDILAVEGLIQVFNFYVNLLINALPGSVVNENLEGHKIVKIAEAEEQQIALLANAMLLADELLPRAVIKLSNSTIGDDSQRRGSDKQRELKKRLQREVDRLRDSFCRQHALELIFTEEGEARLNALIYLGMDGNVEQPEWFPSPIFQEIFAKLTQVASIAADLFVGRERFATVLLMRLAETVILWLSDDQTFWEEVETGSTPLGPIGLQQLYLDMQFVMIFSSQGRYLSRHLHQAIKNIIERAINAVAATGLDPNSVLPEDEWFVEVCEIAIKMLTGRAVFDNVEGDVASPTSSVQT*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo