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Report for Sequence Feature Glyma.02g021800

Feature Type:gene_model
Chromosome:Gm02
Start:1930733
stop:1931125
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g021800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16600.1AT rotamase CYP 3 JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0865 KOG Cyclophilin type peptidyl-prolyl cis-trans isomerase JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF66Panther JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Expression Patterns of Glyma.02g021800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g021800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g02580 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g021800
>Glyma.02g021800.1 sequence-type=CDS polypeptide=Glyma.02g021800.1.p locus=Glyma.02g021800 ID=Glyma.02g021800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTAACCCTAAGGTCTTCTTCTACATGACCATCGATGGGAAACCTGTTGGTCGCATCGTGATGGGGCTCTACACCAATGTGACTCCTCACACCGCCAAGAACTTCGGGGCGTTTTGCACCGGCGAGAAGGGCGTAAGGAGGAGCAGCAAGCCCCTTCATTACAAGGGCTTGTCCTTCCACGACATGATCTCAAAAACTCGCGGCGAGTCGATCTATGGTGCCAAGTTCACTGTGAAGAAGCACATTTGTCTCGATATCCTCTCCATGGCGAACATTGATCCCGAAACCATCATATTGAAGTTCTTCATTTGCATGGAGAAGACAGAATGGCTTGATGGAATCGGGAGATGA
Predicted protein sequences of Glyma.02g021800
>Glyma.02g021800.1.p sequence-type=predicted peptide transcript=Glyma.02g021800.1 locus=Glyma.02g021800 ID=Glyma.02g021800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPNPKVFFYMTIDGKPVGRIVMGLYTNVTPHTAKNFGAFCTGEKGVRRSSKPLHYKGLSFHDMISKTRGESIYGAKFTVKKHICLDILSMANIDPETIILKFFICMEKTEWLDGIGR*






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