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Report for Sequence Feature Glyma.02g019900

Feature Type:gene_model
Chromosome:Gm02
Start:1816417
stop:1821235
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g019900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14410.1AT ssDNA-binding transcriptional regulator JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006952GO-bp defense response EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
PF08536PFAM Whirly transcription factor JGI N/AIEA

Expression Patterns of Glyma.02g019900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g019900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g02390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g019900
>Glyma.02g019900.1 sequence-type=CDS polypeptide=Glyma.02g019900.1.p locus=Glyma.02g019900 ID=Glyma.02g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGCAGATTCAGTCCATTACCTTGAAGCACCTCTCACTACCAACCCACACTTTCGTTCCTTCAAAGTTCAAAATTCCTTTGAACCGCAATTTTTCTTTAACACCCAGATTCACATTCTCTTCATCACTCTCTGTCAAATGCTACCACCCCAACCTCGTTCAACCCAAGCCATTCCCTCCACTGCCACAACGCCCTCCATTTGCAGAATTGCCGCAGCAAAGGGTGTACGTGGGTTACTCCGTTTACACGAAGAAGGGCATGCTCACCGTGATTCCTAGACCTCCGGAATTTGAATCGAAAAGTTCTGGGGCGTTCAAAGTGTCCAAGGAAGGTTATGTTGTGCTCCAGTTTGCTCCCTCAGTTGGTGCTGATGAGCCCATATATGATTGGAACCACAAGCAGACATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTTGAAAAGCAAAATTGATGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGGGTTCTGAAAAAGCCTGCGAACATGGAGGGAATTCAGAAAAGCATCTTTCTCCCTGTTACAAGGGCAGATCTAGAAGTTTTAAGGTCACTTTTCAATTATATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACTAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG
Predicted protein sequences of Glyma.02g019900
>Glyma.02g019900.1.p sequence-type=predicted peptide transcript=Glyma.02g019900.1 locus=Glyma.02g019900 ID=Glyma.02g019900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQIQSITLKHLSLPTHTFVPSKFKIPLNRNFSLTPRFTFSSSLSVKCYHPNLVQPKPFPPLPQRPPFAELPQQRVYVGYSVYTKKGMLTVIPRPPEFESKSSGAFKVSKEGYVVLQFAPSVGADEPIYDWNHKQTFSLSVSEMGTLIILGARDSWEFSHETVKLKSKIDVRKVLKVEPLLDATGHLFSLRVLKKPANMEGIQKSIFLPVTRADLEVLRSLFNYIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR*






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