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Report for Sequence Feature Glyma.02g017200

Feature Type:gene_model
Chromosome:Gm02
Start:1527843
stop:1532251
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g017200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02390.1AT poly(ADP-ribose) polymerase JGI N/AIEA
GO:0006273GO-bp lagging strand elongation EnsemblGenomesN/AIEA
GO:0006471GO-bp protein ADP-ribosylation EnsemblGenomesN/AIEA
GO:0006471GO-bp protein ADP-ribosylation JGI N/AIEA
GO:0051103GO-bp DNA ligation involved in DNA repair EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003910GO-mf DNA ligase (ATP) activity EnsemblGenomesN/AIEA
GO:0003950GO-mf NAD+ ADP-ribosyltransferase activity EnsemblGenomesN/AIEA
GO:0003950GO-mf NAD+ ADP-ribosyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
PTHR15447Panther POLY [ADP-RIBOSE] POLYMERASE JGI N/AIEA
PF00644PFAM Poly(ADP-ribose) polymerase catalytic domain JGI N/AIEA
PF02877PFAM Poly(ADP-ribose) polymerase, regulatory domain JGI N/AIEA
PF05406PFAM WGR domain JGI N/AIEA

Expression Patterns of Glyma.02g017200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g017200
ParalogEvidenceComments
Glyma.10g017700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g017200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g02080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g017200
>Glyma.02g017200.1 sequence-type=CDS polypeptide=Glyma.02g017200.1.p locus=Glyma.02g017200 ID=Glyma.02g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGACCTATCGTTGCAGACTTCCACTATAATGGTGGTGACTTCCTTGTTTACAATAGATGGGAAAGCGTAGGTGTAAAGGGACAAGACAAGATACATGGCCCTTTTAAATCATGTGAGAGTGCCATTCAGGAATTTGAACAAAAGTTTTTAGCCAAGACCAAGAATGCTTGGTCCAGTAGGAATAATTTTGTTTGCTATCCTAAAAGTTATGCTTGGTTGGAAATGGACTACAGTGGCAAGGAAAATGAATCTACTGTTACAGAAAATCCTGACCATGCTTTAGGAAAGCAGCCTCAGGAATCTAAACTTGAGCCACGTGTTGCAAAATTTATATCTCTTGTTTGCAATGGCTATGAAGTTCTCAAAAGATTGGCTAATGTGATTGATAAAGGTGATAGGAAAGTTCTGAAACAATTAAGTGGAGAATTCTACACTGTAATTCCTCATGATTTTGGATTCAAAAAAGTGCGTGAGTTTGTGATCGATACCCCTCAGAAGTTAAAACGAAAGTTAGAAATGGTTGAGGCTCTTGCTGAAATTGAGGTTGCCACAAAGCTCTTGAAAGATGACGCAGAAATGCAGGGAGATCCTCTGTATACTCATTATCAACGCCTTCATTGTGAACTGGCACCAGTTGAATTTGGTTGTGTGGAATTTTCTATGATTGAAGAGTATACGAAGAACACTCATGCAGAAACACATTCAAACTATACTGTGGATATTGTTCAAATATTCAGGACATCAAGAGAAGGCGAGGCAGAACGGTTCAGAAAGCCTGCCTCCTTGTTTGATTCCACAGCTAATTCCAGTTCATTGCTTTTAAATGCACTAGTGAATCTTTCATATAGGTTCAAATATTGTGTTTTCACAAAAGGATTAGGAGGTACTGCTCTTGATCCTTCAAAAGCTCAGGAACTTGAGGATGGGCTCGTAGTTCCCCTAGGAAAGCCCAAAACAGAATCAGGCAAAAAGGGCGATCTATTGTACAATGAATACATTGTTTATAATGTGGAGCAGATTAGGATGCGCTATATTGTTCACTTAAATTTCAATTTTAAGACTACAAGTTAG
Predicted protein sequences of Glyma.02g017200
>Glyma.02g017200.1.p sequence-type=predicted peptide transcript=Glyma.02g017200.1 locus=Glyma.02g017200 ID=Glyma.02g017200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGPIVADFHYNGGDFLVYNRWESVGVKGQDKIHGPFKSCESAIQEFEQKFLAKTKNAWSSRNNFVCYPKSYAWLEMDYSGKENESTVTENPDHALGKQPQESKLEPRVAKFISLVCNGYEVLKRLANVIDKGDRKVLKQLSGEFYTVIPHDFGFKKVREFVIDTPQKLKRKLEMVEALAEIEVATKLLKDDAEMQGDPLYTHYQRLHCELAPVEFGCVEFSMIEEYTKNTHAETHSNYTVDIVQIFRTSREGEAERFRKPASLFDSTANSSSLLLNALVNLSYRFKYCVFTKGLGGTALDPSKAQELEDGLVVPLGKPKTESGKKGDLLYNEYIVYNVEQIRMRYIVHLNFNFKTTS*






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