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Report for Sequence Feature Glyma.02g016400

Feature Type:gene_model
Chromosome:Gm02
Start:1466563
stop:1469437
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g016400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02290.1AT glycosyl hydrolase 9B13 JGI N/AIEA
GO:0000272GO-bp polysaccharide catabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0030245GO-bp cellulose catabolic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0008810GO-mf cellulase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016798GO-mf hydrolase activity, acting on glycosyl bonds EnsemblGenomesN/AIEA
PTHR22298Panther ENDO-1,4-BETA-GLUCANASE JGI N/AIEA
PF00759PFAM Glycosyl hydrolase family 9 JGI N/AIEA
GN7V-49854SoyCyc9-rxn cellulase Plant Metabolic Network ISS

Proteins Associated with Glyma.02g016400
LocusGene SymbolProtein Name
CEL7 alpha family endo-beta-1,4-glucanase

Expression Patterns of Glyma.02g016400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g016400
ParalogEvidenceComments
Glyma.10g017000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g016400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g016400
>Glyma.02g016400.1 sequence-type=CDS polypeptide=Glyma.02g016400.1.p locus=Glyma.02g016400 ID=Glyma.02g016400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTTTCTCCCTTTCATTCACCACTCTGCTTTCCCTTCTCTCTGTCATTCTGCTTCATGTCAATGCCTTCCCCGTTCATTTCAATCACCCCATACACCATCGCCACCCTCGCTTTGCCGCTCATAACTACAGAGACGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGTTTTCCCATGGCATTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGCCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGATACTCCAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTCTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTACCGTCGATTGCTGTACACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTCGTGGGGGCCATTGTTGGTGGACCAGATCGGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCGGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTTGGTCAACTCTAG
Predicted protein sequences of Glyma.02g016400
>Glyma.02g016400.1.p sequence-type=predicted peptide transcript=Glyma.02g016400.1 locus=Glyma.02g016400 ID=Glyma.02g016400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTFSLSFTTLLSLLSVILLHVNAFPVHFNHPIHHRHPRFAAHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKILVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLISGTSLSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDRHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL*






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