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Report for Sequence Feature Glyma.02g015800

Feature Type:gene_model
Chromosome:Gm02
Start:1423523
stop:1432617
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g015800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G50950.2AT FUMARASE 2 JGI N/AIEA
GO:0006099GO-bp tricarboxylic acid cycle EnsemblGenomesN/AIEA
GO:0006099GO-bp tricarboxylic acid cycle JGI N/AIEA
GO:0006106GO-bp fumarate metabolic process EnsemblGenomesN/AIEA
GO:0006108GO-bp malate metabolic process EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0045239GO-cc tricarboxylic acid cycle enzyme complex EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004333GO-mf fumarate hydratase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity JGI N/AIEA
KOG1317 KOG Fumarase JGI N/AIEA
PTHR11444Panther ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE JGI N/AIEA
PTHR11444:SF1Panther FUMARATE HYDRATASE, MITOCHONDRIAL JGI N/AIEA
PF00206PFAM Lyase JGI N/AIEA
PF10415PFAM Fumarase C C-terminus JGI N/AIEA
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-561SoyCyc9 superpathway of glyoxylate cycle and fatty acid degradation Plant Metabolic Network ISS
PWY-5690SoyCyc9 TCA cycle II (plants and fungi) Plant Metabolic Network ISS
GN7V-57502SoyCyc9-rxn fumarate hydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g015800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g015800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g015800
>Glyma.02g015800.1 sequence-type=CDS polypeptide=Glyma.02g015800.1.p locus=Glyma.02g015800 ID=Glyma.02g015800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACTTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGTGGTGAGAAGTTTGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCTAATGATACATTCCCAACTGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAGTCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAGTGAAGTACGGTATTGATAGAGTAATTGACACTTTGCCACGCATGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACCAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTGTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTGTTCAAGCCAATGATTGCCAATTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCGTCTGCTTCCTTTGAAAAGAATTGTTTGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTTATGCTTGTCACATCCTTAAACCCAAAAATCGGTTATGACAAGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGA
Predicted protein sequences of Glyma.02g015800
>Glyma.02g015800.1.p sequence-type=predicted peptide transcript=Glyma.02g015800.1 locus=Glyma.02g015800 ID=Glyma.02g015800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSFREERDTFGAIQVPSEKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPNVGEAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHDTLNSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIDTLPRMYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTVVASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIANCLLHSLRLLGDSSASFEKNCLRGIQANRERISKLLHESLMLVTSLNPKIGYDKAATVAKTAHKEGTTLKEAALKLGVLCSEDFDKLVVPEKMLGPSD*






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