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Report for Sequence Feature Glyma.02g007800

Feature Type:gene_model
Chromosome:Gm02
Start:807313
stop:814760
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g007800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62130.1AT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
KOG1549 KOG Cysteine desulfurase NFS1 JGI N/AIEA
PTHR11601Panther CYSTEINE DESULFURYLASE JGI N/AIEA
PTHR11601:SF13Panther JGI N/AIEA
PF00266PFAM Aminotransferase class-V JGI N/AIEA
GN7V-67671SoyCyc9-rxn isopenicillin N epimerase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g007800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g007800
ParalogEvidenceComments
Glyma.10g137700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g007800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01070 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g007800
>Glyma.02g007800.2 sequence-type=transcript locus=Glyma.02g007800 ID=Glyma.02g007800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGCTCGGGTGAGGCCCATCCACCCGTTGTCTCTTTTTCTTCTATAAAACTATATAAAAAGCGGAAGACAATCTTACTAGTCAAGAACAAAATATATTTTTTTTTTTTAAAAAAAAGGAGAAAAGACGAACCGAATAACGACAATTTCAGCACTCAAGAGTTCCTCACTTCCTCTCCCCAGCTATGTTATCTccaaccgccaaccaccaaccaccaaccaccaacGGCTCACTCTCTCCCCAAACAATAACAATGACAACACTTCCCGAAACCCCCACCATGGAAAACGACAACACCACCCACCTAAACGGCACCGGCAAGAAACCCAAGCTCGCGCACGTCACGCACACCATTTCCGAGGCCGAGATCCGCGAGGAATTCTCCCACCACCACCGCGGCGTCGCCAGAATCAACAATGGCAGCTTTGGCAGCTGCCCGCATTCCGTCCTCGCCGCGCAGTCCACCTGGCAGCTCCGCTTCCTCCAGCAGCCCGACGACTTCTACTTCAACGCGCTCCGCCCCGGTATCCTCGCCTCACGCGCCGCCATCCAAGACCTCATCAATGCCGGCCACGTGGACGACGTCTCCCTCGTTGACAAcgccaccaccgccgccgccgtcgtcctccagcagatcggccgccgcTTCGTCCGCGGCTACTTCCACCGGAACGACGCCGTTGTGATGTTCCACTGCGCCTACCAGGCCGTGAAGAAATCCATTGAAGCTTACGTCAGTCCCATCGGCGGCACCATCGTCGAGGTTGAACTCCCCTTTCCGGTGCGCTCGGAGGAAGAAATCATAACGGAGTTCAAGAAAGGCCTCGAGAAAGGTAAACTCAACGGCGGAAGAGTTAGGTTAGCGATAATCGATCACATAACTTCCATGCCTTCGTTCGTTCTCCCCGTTCGCGAATTGATCAGGGTTTGCAGAGAGCACGGAGTGGAGCAGGTTTTCGTCGACGGCGCTCACGCCATTGGAAGCGTCCCCGTGGACGTTAAGGAAATTGGAGCTGATTTTTACGTGAGCAATTTGTACAAGTGGTTTTTCTCGCCGCCTTCGGTGGCGTTTTTGTATTGTAAGGAAAAATCAAACGACGTGCACCACCCTGTCGTTTCACAGGAGTACGGGAAGGGCCTACCGGTTGAGAGTGCGTGGGTGGGGATGCGTGACTATAGCCCCCAGCTTGTTGTGCCATCGATTTTGGAGTTCGTGAATCGGTTTGAGGGTGGGATTGAGGGGATTATGAAGAGGAACCATGACGGGGTTGTGAAAATGGGAACCATGTTGGCGGAGTCGTGGGGAACGGTTCTGGGGTCGCCTCCTGATATGTGTGCTAGCATGATTATGGTGGGGTTGCCTTCTAGGTTGCGTGTGATGAGTGTTGATGATGCATTGAGGTTAAGGTCGTACCTTAGGGTTTATCATGCAGTTGAAGTTCCTGTGTATTACCAGGCTTTGAGGAATGGTGATAGGGATCCTAGGGACAAGGATGGGTTTATAACTGGTTACGTAAGGATATCTCATCAAGTTTATAATACTGCTGATGATTATGAGAGGCTTAAGACTGCGATCAATCAGCTTGTGGAGGACGGGAAAGTTTGCAGCGGGCTTCCTAAGGAGTGATTTGAAAGAAAAGAATGAATGAGGTGTAAAGAATGATGTAGGATACCATCTTCTAGCAGACTTAAGCAATGTAGAAGTGTGGCCACGTATGATTATCGTAATGGAAAATGTTAAACTGTTGGAGCCCTCTTGTAAAAATAACCTATACGAGGTTAACTTTGTATGCTGGGACTTGTAATTGTTGAAGAATAAAAGAGGATCTTACTGGAGGCTGGATTTTGATGGCTACATAATGAAATTAGAAAGCTGAGGTTTGTGAGGCATTGTTTTCTACTTCTGGTTTCTGGCGACCTGGTAGCTTTCTTTAGTTCTACTAATGGATTTAAAATGAGTTTCATGAGCTAACTGCCTCTCAATCATTGACTACTGGTTTGTATGTTGAGGTTTCTTCTTGGTAACTGGGGCAAACCAAGTTTAAATCCTGCCTTGGTGCTGAAAACCAAAATTGGATAACTACTCTGTAAGAAAGGTGCTGGTACCATACTTGAAGGGCTCAATTATTTGCATTATCTGATCTCAACTAATGTCCAATCTTAGAATTTTGCTGTTGGTATTCATGGAGTAACCTCGCAGCCTTGTTAACATTCTGGTTGGAAGAGTATATTTTATTCCTAACTTAGATGGCCCTACGTGTAAGCCATATGCCATGCACGAGCGTCATTGATGGCCAAGATTCATGCATCCATACAGCTAGTGACACTGTTGCTGTATTATTAAACATCAAACTGCAGGGTGATAGAAACAAAATTTGCTTCACTTGAATGGAATTCCAAAAGGAGCTAGGGTGACGTTAGTCTATAAATAAATAGGGTGGGATTGATATAGGAAAGAGTTGGAAATTTTGTACTCACAATCACTCAAACCTTACACATTTGTCCACTAGGATACAGAGGCGCTCAGAAGAGCAATGTATGAACTTCCAACGAGAAAGTAAAATTGTTCATTTGATTTAGTTCTCCTCCTCTTCATTGATTTTTGTTCGTCACTCTCCATTCTTGTAATTTCTCTTTTATTTTCTTACAATAATATAATTCTTTCGTTAATTTA
Coding sequences of Glyma.02g007800
>Glyma.02g007800.1 sequence-type=CDS polypeptide=Glyma.02g007800.1.p locus=Glyma.02g007800 ID=Glyma.02g007800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTATCTCCAACCGCCAACCACCAACCACCAACCACCAACGGCTCACTCTCTCCCCAAACAATAACAATGACAACACTTCCCGAAACCCCCACCATGGAAAACGACAACACCACCCACCTAAACGGCACCGGCAAGAAACCCAAGCTCGCGCACGTCACGCACACCATTTCCGAGGCCGAGATCCGCGAGGAATTCTCCCACCACCACCGCGGCGTCGCCAGAATCAACAATGGCAGCTTTGGCAGCTGCCCGCATTCCGTCCTCGCCGCGCAGTCCACCTGGCAGCTCCGCTTCCTCCAGCAGCCCGACGACTTCTACTTCAACGCGCTCCGCCCCGGTATCCTCGCCTCACGCGCCGCCATCCAAGACCTCATCAATGCCGGCCACGTGGACGACGTCTCCCTCGTTGACAACGCCACCACCGCCGCCGCCGTCGTCCTCCAGCAGATCGGCCGCCGCTTCGTCCGCGGCTACTTCCACCGGAACGACGCCGTTGTGATGTTCCACTGCGCCTACCAGGCCGTGAAGAAATCCATTGAAGCTTACGTCAGTCCCATCGGCGGCACCATCGTCGAGGTTGAACTCCCCTTTCCGGTGCGCTCGGAGGAAGAAATCATAACGGAGTTCAAGAAAGGCCTCGAGAAAGGTAAACTCAACGGCGGAAGAGTTAGGTTAGCGATAATCGATCACATAACTTCCATGCCTTCGTTCGTTCTCCCCGTTCGCGAATTGATCAGGGTTTGCAGAGAGCACGGAGTGGAGCAGGTTTTCGTCGACGGCGCTCACGCCATTGGAAGCGTCCCCGTGGACGTTAAGGAAATTGGAGCTGATTTTTACGTGAGCAATTTGTACAAGTGGTTTTTCTCGCCGCCTTCGGTGGCGTTTTTGTATTGTAAGGAAAAATCAAACGACGTGCACCACCCTGTCGTTTCACAGGAGTACGGGAAGGGCCTACCGGTTGAGAGTGCGTGGGTGGGGATGCGTGACTATAGCCCCCAGCTTGTTGTGCCATCGATTTTGGAGTTCGTGAATCGGTTTGAGGGTGGGATTGAGGGGATTATGAAGAGGAACCATGACGGGGTTGTGAAAATGGGAACCATGTTGGCGGAGTCGTGGGGAACGGTTCTGGGGTCGCCTCCTGATATGTGTGCTAGCATGATTATGGTGGGGTTGCCTTCTAGGTTGCGTGTGATGAGTGTTGATGATGCATTGAGGTTAAGGTCGTACCTTAGGGTTTATCATGCAGTTGAAGTTCCTGTGTATTACCAGGCTTTGAGGAATGGTGATAGGGATCCTAGGGACAAGGATGGGTTTATAACTGGTTACGTAAGGATATCTCATCAAGTTTATAATACTGCTGATGATTATGAGAGGCTTAAGACTGCGATCAATCAGCTTGTGGAGGACGGGAAAGTTTGCAGCGGGCTTCCTAAGGAGTGA

>Glyma.02g007800.2 sequence-type=CDS polypeptide=Glyma.02g007800.2.p locus=Glyma.02g007800 ID=Glyma.02g007800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTATCTCCAACCGCCAACCACCAACCACCAACCACCAACGGCTCACTCTCTCCCCAAACAATAACAATGACAACACTTCCCGAAACCCCCACCATGGAAAACGACAACACCACCCACCTAAACGGCACCGGCAAGAAACCCAAGCTCGCGCACGTCACGCACACCATTTCCGAGGCCGAGATCCGCGAGGAATTCTCCCACCACCACCGCGGCGTCGCCAGAATCAACAATGGCAGCTTTGGCAGCTGCCCGCATTCCGTCCTCGCCGCGCAGTCCACCTGGCAGCTCCGCTTCCTCCAGCAGCCCGACGACTTCTACTTCAACGCGCTCCGCCCCGGTATCCTCGCCTCACGCGCCGCCATCCAAGACCTCATCAATGCCGGCCACGTGGACGACGTCTCCCTCGTTGACAACGCCACCACCGCCGCCGCCGTCGTCCTCCAGCAGATCGGCCGCCGCTTCGTCCGCGGCTACTTCCACCGGAACGACGCCGTTGTGATGTTCCACTGCGCCTACCAGGCCGTGAAGAAATCCATTGAAGCTTACGTCAGTCCCATCGGCGGCACCATCGTCGAGGTTGAACTCCCCTTTCCGGTGCGCTCGGAGGAAGAAATCATAACGGAGTTCAAGAAAGGCCTCGAGAAAGGTAAACTCAACGGCGGAAGAGTTAGGTTAGCGATAATCGATCACATAACTTCCATGCCTTCGTTCGTTCTCCCCGTTCGCGAATTGATCAGGGTTTGCAGAGAGCACGGAGTGGAGCAGGTTTTCGTCGACGGCGCTCACGCCATTGGAAGCGTCCCCGTGGACGTTAAGGAAATTGGAGCTGATTTTTACGTGAGCAATTTGTACAAGTGGTTTTTCTCGCCGCCTTCGGTGGCGTTTTTGTATTGTAAGGAAAAATCAAACGACGTGCACCACCCTGTCGTTTCACAGGAGTACGGGAAGGGCCTACCGGTTGAGAGTGCGTGGGTGGGGATGCGTGACTATAGCCCCCAGCTTGTTGTGCCATCGATTTTGGAGTTCGTGAATCGGTTTGAGGGTGGGATTGAGGGGATTATGAAGAGGAACCATGACGGGGTTGTGAAAATGGGAACCATGTTGGCGGAGTCGTGGGGAACGGTTCTGGGGTCGCCTCCTGATATGTGTGCTAGCATGATTATGGTGGGGTTGCCTTCTAGGTTGCGTGTGATGAGTGTTGATGATGCATTGAGGTTAAGGTCGTACCTTAGGGTTTATCATGCAGTTGAAGTTCCTGTGTATTACCAGGCTTTGAGGAATGGTGATAGGGATCCTAGGGACAAGGATGGGTTTATAACTGGTTACGTAAGGATATCTCATCAAGTTTATAATACTGCTGATGATTATGAGAGGCTTAAGACTGCGATCAATCAGCTTGTGGAGGACGGGAAAGTTTGCAGCGGGCTTCCTAAGGAGTGA
Predicted protein sequences of Glyma.02g007800
>Glyma.02g007800.1.p sequence-type=predicted peptide transcript=Glyma.02g007800.1 locus=Glyma.02g007800 ID=Glyma.02g007800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSPTANHQPPTTNGSLSPQTITMTTLPETPTMENDNTTHLNGTGKKPKLAHVTHTISEAEIREEFSHHHRGVARINNGSFGSCPHSVLAAQSTWQLRFLQQPDDFYFNALRPGILASRAAIQDLINAGHVDDVSLVDNATTAAAVVLQQIGRRFVRGYFHRNDAVVMFHCAYQAVKKSIEAYVSPIGGTIVEVELPFPVRSEEEIITEFKKGLEKGKLNGGRVRLAIIDHITSMPSFVLPVRELIRVCREHGVEQVFVDGAHAIGSVPVDVKEIGADFYVSNLYKWFFSPPSVAFLYCKEKSNDVHHPVVSQEYGKGLPVESAWVGMRDYSPQLVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPDMCASMIMVGLPSRLRVMSVDDALRLRSYLRVYHAVEVPVYYQALRNGDRDPRDKDGFITGYVRISHQVYNTADDYERLKTAINQLVEDGKVCSGLPKE*

>Glyma.02g007800.2.p sequence-type=predicted peptide transcript=Glyma.02g007800.2 locus=Glyma.02g007800 ID=Glyma.02g007800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLSPTANHQPPTTNGSLSPQTITMTTLPETPTMENDNTTHLNGTGKKPKLAHVTHTISEAEIREEFSHHHRGVARINNGSFGSCPHSVLAAQSTWQLRFLQQPDDFYFNALRPGILASRAAIQDLINAGHVDDVSLVDNATTAAAVVLQQIGRRFVRGYFHRNDAVVMFHCAYQAVKKSIEAYVSPIGGTIVEVELPFPVRSEEEIITEFKKGLEKGKLNGGRVRLAIIDHITSMPSFVLPVRELIRVCREHGVEQVFVDGAHAIGSVPVDVKEIGADFYVSNLYKWFFSPPSVAFLYCKEKSNDVHHPVVSQEYGKGLPVESAWVGMRDYSPQLVVPSILEFVNRFEGGIEGIMKRNHDGVVKMGTMLAESWGTVLGSPPDMCASMIMVGLPSRLRVMSVDDALRLRSYLRVYHAVEVPVYYQALRNGDRDPRDKDGFITGYVRISHQVYNTADDYERLKTAINQLVEDGKVCSGLPKE*






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