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Report for Sequence Feature Glyma.02g007700

Feature Type:gene_model
Chromosome:Gm02
Start:795208
stop:806375
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01800.1AT Albino or Glassy Yellow 1 JGI N/AIEA
GO:0006605GO-bp protein targeting EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0009658GO-bp chloroplast organization EnsemblGenomesN/AIEA
GO:0010109GO-bp regulation of photosynthesis EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0017038GO-bp protein import EnsemblGenomesN/AIEA
GO:0017038GO-bp protein import JGI N/AIEA
GO:0071806GO-bp protein transmembrane transport EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
GO:0015462GO-mf ATPase-coupled protein transmembrane transporter activity EnsemblGenomesN/AIEA
PF01043PFAM SecA preprotein cross-linking domain JGI N/AIEA
PF07516PFAM SecA Wing and Scaffold domain JGI N/AIEA
PF07517PFAM SecA DEAD-like domain JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.02g007700 not represented in the dataset

Glyma.02g007700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.10g137800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01060 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.02g007700.1 sequence-type=CDS polypeptide=Glyma.02g007700.1.p locus=Glyma.02g007700 ID=Glyma.02g007700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGCGTCTTCGCTCTGTTCCTCTTTCACCTCCAAAACGTGGAACCCGCACGCGCGCTATCACCACAAAACCCTAGCACCTCCCTATTCCGCCTTTCTTCGCGGAGACCTCCAGCTCCATCCACCTTCGGTTTCCGGAACGCGGCGGAGAAGGCGCCGCCGATCGGGTTCGGTGGCGTCCCTCGGAGGCTTGTTGGGCGGCATCTTCAAAGGCGCCGATACGGGAGAAGCCACGAAGCAGCAATACGCTGCGACCGTTAACATAATCAATGGATTGGAACCGGAGATTTCTGCTTTGTCGGATTCGGAACTGAGGGACAGGACTTTTGCGCTGCGAGAACGCGCGCAGCATGGCCAGTCTTTGGATTCGCTCTTGCCAGAGGCGTTTGCTGTGGTGAGAGAAGCTTCGAAGAGGGTTCTGGGCCTTCGTCCCTTCGATGTCCAGCTCATAGGAGGCATGGTTCTTCATAAGGGAGAAATAGCTGAAATGAGGACCGGAGAAGGGAAGACACTGGTTGCTGTTTTGCCAGCTTATTTAAATGCATTGAGTGGGAAGGGAGTTCATGTTGTAACTGTCAATGATTATCTAGCTCGGAGGGATTGTGAGTGGGTTGGTCAGGTTCCTCGCTTTCTTGGATTGAAGGTTGGCCTCATTCAGCAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGCCACGGAAAATCTTGTCATAAGGGGTTTCAATTACTGTATCATTGATGAGGTTGATTCAATCCTTATTGATGAAGCTAGAACACCGCTTATTATATCTGGACCTGCAGAGAAACCCAGTGATCAATATTATAAGGCTGCAAAGATTGCAGAAGCCTTTGAACAAGACATACATTACACTGTAGACGAAAAACAGAAAACAGTTCTACTTTCTGAGCAAGGTTATGAAGATGCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCTCGAGAACAGTGGGCTTCATATATCCTAAATGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATTGTGCCAACAAACAAACCTATGATAAGAAAGGATGAATCTGATGTAGTTTTTAGGGCAACTTCAGGGAAATGGCGTGCAGTTGTAGTAGAAATCTCTAGGATGCACAAAACCGGTCGCCCGGTGCTTGTTGGCACCACTAGTGTTGAGCAGAGTGATTCTTTGTCAGAGCAATTGAAAGAAGCTGGAATTCCGCACGAGGTACTTAATGCAAAACCAGAAAATGTTGAGAGGGAAGCAGAAATTGTAGCACAGAGTGGTCGTCTTGGGGCAGTGACAATTGCTACCAATATGGCTGGTCGTGGGACAGATATAATCCTTGGTGGTAATGCAGAATTTATGGCACGGTTGAAGCTTCGTGAAATATTGATGCCAAGAGTTGTTAAGCCATCTGAAGAAGGCTTTGTATCAATAAAGAAACCTCCTCCCTCCAAGACATGGAAGGTGAATGAGAAGTTATTCCCATGCCAACTATCAAATAAAAATGTTGACATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGGGTCCTGCTCAAGATGAAGTCATTGCCAAGCTGAGAAATGCATTTCTGGAAATTGGAAAAGAATATAAAGTCTTCACTGAGGAAGAGAGGAAGAAGGTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGCTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTCTTAAGTCTTGAAGATAACATATTTCGTATTTTTGGTGGAGATCGAATTCAGGGCTTAATGCGAGCTTTCAGAGTTGAAGACCTACCTATTGAGTCCAAGATGTTGACCAAAGCATTAGACGAAGCCCAAAGGAAAGTGGAGAACTATTTCTTTGACATTCGGAAGCAATTGTTTGAGTATGATGAAGTACTTAACAGCCAAAGAGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAGCAAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTTGAAAAACTAACTGCAAAAATTCAGCAATATTGCTACTTGTTGAATACTCTATCCCCTGATTTGCTGGGGAACACGTGTTCAGATTATGAGGAATTGCGGAATTATCTCCGTCTTCGTGGTCGTGAAGCCTACCTGCAGAAAAGGGATATTGTGGAGCAACAAGCAGCAGGCTTAATGAAAGAAGCAGAGCGGTTCCTAATCTTAAGCAATATCGATCGCCTGTGGAAAGAACATTTGCAGGCACTAAAATTTGTTCAGCAAGCCGTGGGGTTACGGGGATATGCGCAGCGGGATCCACTTATTGAGTATAAGCTTGAAGGCTATAACCTTTTCTTGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATATTGCACGCACTCAGGTTAATCCAAACTCTGATCCAGTTGGCACTGTCGAGCCTTCAACATCAAGTACTACTTCCTAA

>Glyma.02g007700.1.p sequence-type=predicted peptide transcript=Glyma.02g007700.1 locus=Glyma.02g007700 ID=Glyma.02g007700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASSLCSSFTSKTWNPHARYHHKTLAPPYSAFLRGDLQLHPPSVSGTRRRRRRRSGSVASLGGLLGGIFKGADTGEATKQQYAATVNIINGLEPEISALSDSELRDRTFALRERAQHGQSLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAVLPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTSQQRKENYSCDITYVTNSELGFDYLRDNLATENLVIRGFNYCIIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIAEAFEQDIHYTVDEKQKTVLLSEQGYEDAEEILAVKDLYDPREQWASYILNAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYKLKVTIVPTNKPMIRKDESDVVFRATSGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLSEQLKEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRVVKPSEEGFVSIKKPPPSKTWKVNEKLFPCQLSNKNVDMAEKAVQLAVETWGKRSLTELEAEERLSYTCEKGPAQDEVIAKLRNAFLEIGKEYKVFTEEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALESDNLQSLLIEYAELTMDDILEANIGSDAPKDSWDLEKLTAKIQQYCYLLNTLSPDLLGNTCSDYEELRNYLRLRGREAYLQKRDIVEQQAAGLMKEAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSVYQFQPVLVKQDQDKTENRKSGKRNIARTQVNPNSDPVGTVEPSTSSTTS*







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