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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G01800.1 | AT | Albino or Glassy Yellow 1 | JGI | N/A | IEA |
| GO:0006605 | GO-bp | protein targeting | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0009658 | GO-bp | chloroplast organization | EnsemblGenomes | N/A | IEA |
| GO:0010109 | GO-bp | regulation of photosynthesis | EnsemblGenomes | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0017038 | GO-bp | protein import | EnsemblGenomes | N/A | IEA |
| GO:0017038 | GO-bp | protein import | JGI | N/A | IEA |
| GO:0071806 | GO-bp | protein transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0009941 | GO-cc | chloroplast envelope | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0008026 | GO-mf | ATP-dependent helicase activity | JGI | N/A | IEA |
| GO:0015462 | GO-mf | ATPase-coupled protein transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| PF01043 | PFAM | SecA preprotein cross-linking domain | JGI | N/A | IEA |
| PF07516 | PFAM | SecA Wing and Scaffold domain | JGI | N/A | IEA |
| PF07517 | PFAM | SecA DEAD-like domain | JGI | N/A | IEA |
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Glyma.02g007700 not represented in the dataset |
Glyma.02g007700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g137800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g01060 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g007700.1 sequence-type=CDS polypeptide=Glyma.02g007700.1.p locus=Glyma.02g007700 ID=Glyma.02g007700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAGCGTCTTCGCTCTGTTCCTCTTTCACCTCCAAAACGTGGAACCCGCACGCGCGCTATCACCACAAAACCCTAGCACCTCCCTATTCCGCCTTTCTTCGCGGAGACCTCCAGCTCCATCCACCTTCGGTTTCCGGAACGCGGCGGAGAAGGCGCCGCCGATCGGGTTCGGTGGCGTCCCTCGGAGGCTTGTTGGGCGGCATCTTCAAAGGCGCCGATACGGGAGAAGCCACGAAGCAGCAATACGCTGCGACCGTTAACATAATCAATGGATTGGAACCGGAGATTTCTGCTTTGTCGGATTCGGAACTGAGGGACAGGACTTTTGCGCTGCGAGAACGCGCGCAGCATGGCCAGTCTTTGGATTCGCTCTTGCCAGAGGCGTTTGCTGTGGTGAGAGAAGCTTCGAAGAGGGTTCTGGGCCTTCGTCCCTTCGATGTCCAGCTCATAGGAGGCATGGTTCTTCATAAGGGAGAAATAGCTGAAATGAGGACCGGAGAAGGGAAGACACTGGTTGCTGTTTTGCCAGCTTATTTAAATGCATTGAGTGGGAAGGGAGTTCATGTTGTAACTGTCAATGATTATCTAGCTCGGAGGGATTGTGAGTGGGTTGGTCAGGTTCCTCGCTTTCTTGGATTGAAGGTTGGCCTCATTCAGCAGAATATGACAAGTCAGCAAAGAAAGGAAAATTACTCATGTGATATAACATATGTCACTAATAGTGAGCTTGGTTTTGATTACTTGAGAGACAATCTTGCCACGGAAAATCTTGTCATAAGGGGTTTCAATTACTGTATCATTGATGAGGTTGATTCAATCCTTATTGATGAAGCTAGAACACCGCTTATTATATCTGGACCTGCAGAGAAACCCAGTGATCAATATTATAAGGCTGCAAAGATTGCAGAAGCCTTTGAACAAGACATACATTACACTGTAGACGAAAAACAGAAAACAGTTCTACTTTCTGAGCAAGGTTATGAAGATGCTGAAGAAATTTTAGCTGTCAAAGATTTATATGATCCTCGAGAACAGTGGGCTTCATATATCCTAAATGCAATAAAAGCAAAAGAACTATTTCTTCGAGATGTAAACTACATCATTCGTGGAAAAGAGGTCCTAATTGTTGATGAGTTTACTGGTCGAGTCATGCAGGGGAGAAGGTGGAGTGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAATTTGAGAGCATTTACAAGCTTAAAGTTACAATTGTGCCAACAAACAAACCTATGATAAGAAAGGATGAATCTGATGTAGTTTTTAGGGCAACTTCAGGGAAATGGCGTGCAGTTGTAGTAGAAATCTCTAGGATGCACAAAACCGGTCGCCCGGTGCTTGTTGGCACCACTAGTGTTGAGCAGAGTGATTCTTTGTCAGAGCAATTGAAAGAAGCTGGAATTCCGCACGAGGTACTTAATGCAAAACCAGAAAATGTTGAGAGGGAAGCAGAAATTGTAGCACAGAGTGGTCGTCTTGGGGCAGTGACAATTGCTACCAATATGGCTGGTCGTGGGACAGATATAATCCTTGGTGGTAATGCAGAATTTATGGCACGGTTGAAGCTTCGTGAAATATTGATGCCAAGAGTTGTTAAGCCATCTGAAGAAGGCTTTGTATCAATAAAGAAACCTCCTCCCTCCAAGACATGGAAGGTGAATGAGAAGTTATTCCCATGCCAACTATCAAATAAAAATGTTGACATGGCTGAGAAGGCTGTGCAATTGGCTGTTGAAACATGGGGCAAGAGATCCTTAACTGAACTTGAAGCAGAGGAGCGCCTATCCTATACCTGTGAAAAGGGTCCTGCTCAAGATGAAGTCATTGCCAAGCTGAGAAATGCATTTCTGGAAATTGGAAAAGAATATAAAGTCTTCACTGAGGAAGAGAGGAAGAAGGTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGCTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTCTTAAGTCTTGAAGATAACATATTTCGTATTTTTGGTGGAGATCGAATTCAGGGCTTAATGCGAGCTTTCAGAGTTGAAGACCTACCTATTGAGTCCAAGATGTTGACCAAAGCATTAGACGAAGCCCAAAGGAAAGTGGAGAACTATTTCTTTGACATTCGGAAGCAATTGTTTGAGTATGATGAAGTACTTAACAGCCAAAGAGATCGAGTTTATACAGAGAGAAGACGAGCCCTTGAATCTGACAACCTTCAGTCTCTTCTTATTGAATATGCTGAATTGACAATGGATGACATTTTAGAAGCAAACATTGGTTCTGATGCTCCAAAAGACAGCTGGGATCTTGAAAAACTAACTGCAAAAATTCAGCAATATTGCTACTTGTTGAATACTCTATCCCCTGATTTGCTGGGGAACACGTGTTCAGATTATGAGGAATTGCGGAATTATCTCCGTCTTCGTGGTCGTGAAGCCTACCTGCAGAAAAGGGATATTGTGGAGCAACAAGCAGCAGGCTTAATGAAAGAAGCAGAGCGGTTCCTAATCTTAAGCAATATCGATCGCCTGTGGAAAGAACATTTGCAGGCACTAAAATTTGTTCAGCAAGCCGTGGGGTTACGGGGATATGCGCAGCGGGATCCACTTATTGAGTATAAGCTTGAAGGCTATAACCTTTTCTTGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTATATCAGTTCCAACCTGTGCTGGTAAAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATATTGCACGCACTCAGGTTAATCCAAACTCTGATCCAGTTGGCACTGTCGAGCCTTCAACATCAAGTACTACTTCCTAA
>Glyma.02g007700.1.p sequence-type=predicted peptide transcript=Glyma.02g007700.1 locus=Glyma.02g007700 ID=Glyma.02g007700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASSLCSSFTSKTWNPHARYHHKTLAPPYSAFLRGDLQLHPPSVSGTRRRRRRRSGSVASLGGLLGGIFKGADTGEATKQQYAATVNIINGLEPEISALSDSELRDRTFALRERAQHGQSLDSLLPEAFAVVREASKRVLGLRPFDVQLIGGMVLHKGEIAEMRTGEGKTLVAVLPAYLNALSGKGVHVVTVNDYLARRDCEWVGQVPRFLGLKVGLIQQNMTSQQRKENYSCDITYVTNSELGFDYLRDNLATENLVIRGFNYCIIDEVDSILIDEARTPLIISGPAEKPSDQYYKAAKIAEAFEQDIHYTVDEKQKTVLLSEQGYEDAEEILAVKDLYDPREQWASYILNAIKAKELFLRDVNYIIRGKEVLIVDEFTGRVMQGRRWSDGLHQAVEAKEGLPIQNETVTLASISYQNFFLQFPKLCGMTGTAATESTEFESIYKLKVTIVPTNKPMIRKDESDVVFRATSGKWRAVVVEISRMHKTGRPVLVGTTSVEQSDSLSEQLKEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREILMPRVVKPSEEGFVSIKKPPPSKTWKVNEKLFPCQLSNKNVDMAEKAVQLAVETWGKRSLTELEAEERLSYTCEKGPAQDEVIAKLRNAFLEIGKEYKVFTEEERKKVVEAGGLHVVGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNIFRIFGGDRIQGLMRAFRVEDLPIESKMLTKALDEAQRKVENYFFDIRKQLFEYDEVLNSQRDRVYTERRRALESDNLQSLLIEYAELTMDDILEANIGSDAPKDSWDLEKLTAKIQQYCYLLNTLSPDLLGNTCSDYEELRNYLRLRGREAYLQKRDIVEQQAAGLMKEAERFLILSNIDRLWKEHLQALKFVQQAVGLRGYAQRDPLIEYKLEGYNLFLDMMAQIRRNVIYSVYQFQPVLVKQDQDKTENRKSGKRNIARTQVNPNSDPVGTVEPSTSSTTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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