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Report for Sequence Feature Glyma.02g007400

Feature Type:gene_model
Chromosome:Gm02
Start:765015
stop:766775
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g007400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G02360.1AT Chitinase family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process JGI N/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process EnsemblGenomesN/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0004568GO-mf chitinase activity JGI N/AIEA
KOG4742 KOG Predicted chitinase JGI N/AIEA
PTHR22595Panther CHITINASE-RELATED JGI N/AIEA
PTHR22595:SF11Panther JGI N/AIEA
PF00182PFAM Chitinase class I JGI N/AIEA
PWY-6902SoyCyc9 chitin degradation II (Vibrio) Plant Metabolic Network ISS
GN7V-58896SoyCyc9-rxn chitinase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g007400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g007400
ParalogEvidenceComments
Glyma.10g138400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g007400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01020 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g007400
>Glyma.02g007400.1 sequence-type=CDS polypeptide=Glyma.02g007400.1.p locus=Glyma.02g007400 ID=Glyma.02g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATTCTTATTCTTCCCCTCTAAGGGTATCTTTCTCTCTAGCTTTTTGTTATGCTTTGCTATTCTGTCTTTGGGAGCTGAAGCTCGTAGATCACCATCACCCATCTCTTCTCTCATTAGCAAAGAGCTTTTTGATTCCATTTTCATCCACAAAGATAACAATGCATGCCCTGCCAGAAACTTCTACACCTACGACTCCTTCATCAATGCATCCAAACGCTTCCCAAGATTTGGCACCACTGGTAGTCCAGCCACACGCAAGCGTGAGATTGCTGCCTTTCTTGCTCAGATTTCACATGAAACCACAGGTGGGTGGGCTACTGCACCTGATGGACCCTATGCTTGGGGATTGTGCTTCAAGGAAGAAATTAGTCCTCAAAGTAACTATTGTGATTCCACCAACACACAATGGCCTTGTTATCCAGGACAAAGTTACAAAGGCAGAGGACCAATTCAACTCTCATGGAACTACAACTATGGGCCAGCAGGGAAGGCTTTGGGATTTGATGGGTTGAGAAACCCGGATGTGGTGTCAAACAATTCATTGATTGCCTTTCAAACAGGTCTCTGGTTTTGGATGACAGAGCAAAAGCCCAAACCTTCTTGCCACAATGTAATGGTTGGAAAATATGTGCCAACACAAGCTGACATAGCAGCTAATCGAACTAAAGGGTATGGCCTAGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGATGATTCAAGGGTGAATGATCGGATTGAATACTTTAAGAGATATGCAACCTTGTTTAAAGTAGATACAGGACCTAACTTGGATTGTGCATATCAGAAGTCTTTCCAAACTGTAGCTTAG
Predicted protein sequences of Glyma.02g007400
>Glyma.02g007400.1.p sequence-type=predicted peptide transcript=Glyma.02g007400.1 locus=Glyma.02g007400 ID=Glyma.02g007400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFLFFPSKGIFLSSFLLCFAILSLGAEARRSPSPISSLISKELFDSIFIHKDNNACPARNFYTYDSFINASKRFPRFGTTGSPATRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEISPQSNYCDSTNTQWPCYPGQSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDVVSNNSLIAFQTGLWFWMTEQKPKPSCHNVMVGKYVPTQADIAANRTKGYGLVTNIINGGLECGIPDDSRVNDRIEYFKRYATLFKVDTGPNLDCAYQKSFQTVA*






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