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Report for Sequence Feature Glyma.02g007200

Feature Type:gene_model
Chromosome:Gm02
Start:753713
stop:758894
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g007200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01690.1AT Flavin containing amine oxidoreductase family JGI N/AIEA
GO:0006779GO-bp porphyrin-containing compound biosynthetic process EnsemblGenomesN/AIEA
GO:0006782GO-bp protoporphyrinogen IX biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004729GO-mf oxygen-dependent protoporphyrinogen oxidase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1276 KOG Protoporphyrinogen oxidase JGI N/AIEA
PTHR10742Panther AMINE OXIDASE JGI N/AIEA
PTHR10742:SF16Panther PROTOPORPHYRINOGEN OXIDASE JGI N/AIEA
PF01593PFAM Flavin containing amine oxidoreductase JGI N/AIEA
CHLOROPHYLL-SYNSoyCyc9 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent) Plant Metabolic Network ISS
HEME-BIOSYNTHESIS-IISoyCyc9 heme b biosynthesis I (aerobic) Plant Metabolic Network ISS
PWY-5918SoyCyc9 superpathay of heme b biosynthesis from glutamate Plant Metabolic Network ISS
GN7V-55416SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.02g007200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g007200
ParalogEvidenceComments
Glyma.10g138600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g007200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g01000 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.02g007200
>Glyma.02g007200.1 sequence-type=CDS polypeptide=Glyma.02g007200.1.p locus=Glyma.02g007200 ID=Glyma.02g007200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTTCCGTCTTCAACGACATCCTATTCCCGCCTAACCAAACCCTTTCCCCAACGTCCTTCTTCACCTCTCCCACTCGAAAATTCCCTCGCTCTCGCCCTAACCCTATTCTCCGCTGCTCCATCGCCGAGGAGTCCACCGAGTCTCGGCCCAAAACCGGAGACTCCCCCCCCCCGCCGTTGATGGAGGCGTTAGCGGTCTGGCATCGCCCAGGCCCTCGCCACCAAGCACGCCAATGCCAACACTGTTGGGGAGATTCGAGGGCCCGAGACCGTGTCGGCGGCGGCAACATCACCACGATGGAGAGTGGCGGATACCTCTGGGAAGAAGGCCCCAACAGCTTTCAGCCCTCTGATCCAATGCTCACCATGGTGGTGGACAGTGGCTTAAAGGATCAGCTTGTTTTGGGGGATCCTGATGCACCTCGGTTTGTGTTGTGGAATGGGAAGTTGAGGCCAGTGCCTGGGAAGCCGACTGATTTGCCTTTCTTTGACTTGATGAGCATCGGTGGCAAAATCAGGGCTGGCTTTGGTGTGCTTGGTATTCGGCCTCCTCCTCCAGTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGGTTGGAGCATTGACTTACGTCTGCCAAAACCAAAGGGTCAGACTGTTGGATCTTTTCGGAAGGGACTTATCATGTTGCCTGATGCAATTTCTGCAAGATTAGGCAACAAAGTAAAGTTATCTTGGAAGCTTTCAAGTATTAGTAAACTGGATAGTGGAGAGTACAGTTTGACATATGAAACACCCGAAGGAGTGGTTTCTTTGCAGTGCAAAACCGTTGTCCTGACCATTCCTTCCTATGTTGCTAGTACATTGCTGCGTCCTCTGTCTGCTGCTGCTGCAGATACGCTTTCAAAGTTTTATTACCCTCCAGTTGTTGCAGTTTCCATATCCTATCCAAAAGAAGCTATTAGATCAGAATGCTTGATAGATGGTGAGTTGAAGGGGTTTGGAGCTATATACAGCTCATCACTATTCTCCAATCGAGCACCACCTGGAAGGGTTCTACTCTTGAATTACATTGGAGGAGCTACTAATACTGGAATTTATCAAAGTTTTTCTGGGAAACTTCAAGGATGGTTTAAAGAACTAATCATTTTCACCAGCGGGTTATTTGGGTGTTTTAAACAACTCAGGCCTAATGGTCTTGTTTCGAATACGGACAGTGAACTTGTCGCAACAGTTGATCGAGATTTGAGAAAAATCCTTATAAACCCAAATGCCCAGGATCCATTTGTAGTGGGGGTGAGACTGTGGCCTCAAGCTATTCCACAGTTCTTAATTGGCCATCTTGATCTTCTAGATGTTGCTAAAGCTTCTCTCAGAAATACTGGGTTTGAAGGGCTGTTCCTTGGGGGTAACTATGTGTCTGGTGTTGCCTTGGGACGATGGGTTGAGGGAGCCTGA
Predicted protein sequences of Glyma.02g007200
>Glyma.02g007200.1.p sequence-type=predicted peptide transcript=Glyma.02g007200.1 locus=Glyma.02g007200 ID=Glyma.02g007200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSVFNDILFPPNQTLSPTSFFTSPTRKFPRSRPNPILRCSIAEESTESRPKTGDSPPPPLMEALAVWHRPGPRHQARQCQHCWGDSRARDRVGGGNITTMESGGYLWEEGPNSFQPSDPMLTMVVDSGLKDQLVLGDPDAPRFVLWNGKLRPVPGKPTDLPFFDLMSIGGKIRAGFGVLGIRPPPPVEEFVRRNLGDDVFERLIEPFCSGWSIDLRLPKPKGQTVGSFRKGLIMLPDAISARLGNKVKLSWKLSSISKLDSGEYSLTYETPEGVVSLQCKTVVLTIPSYVASTLLRPLSAAAADTLSKFYYPPVVAVSISYPKEAIRSECLIDGELKGFGAIYSSSLFSNRAPPGRVLLLNYIGGATNTGIYQSFSGKLQGWFKELIIFTSGLFGCFKQLRPNGLVSNTDSELVATVDRDLRKILINPNAQDPFVVGVRLWPQAIPQFLIGHLDLLDVAKASLRNTGFEGLFLGGNYVSGVALGRWVEGA*






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