SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.02g006000

Feature Type:gene_model
Chromosome:Gm02
Start:653250
stop:659153
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g006000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39840.1AT type one serine/threonine protein phosphatase 4 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0374 KOG Serine/threonine specific protein phosphatase PP1, catalytic subunit JGI N/AIEA
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI N/AIEA
PTHR11668:SF136Panther JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA

Proteins Associated with Glyma.02g006000
LocusGene SymbolProtein Name
TOPP1 TOPP-type protein phosphatase gene 1

Expression Patterns of Glyma.02g006000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g006000
ParalogEvidenceComments
Glyma.10g006800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g006000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g00850 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g006000
>Glyma.02g006000.2 sequence-type=transcript locus=Glyma.02g006000 ID=Glyma.02g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
cAATTTCTCCAACTTATTCTTCATTCTTTCCTTCCCTCTATAATGAGTTTAAACTTTAAACTCTAATCTTTCCAACCGAATATATTCTTGTCCTTCCCAATTCAACTGCCACCACTCGTTTCCAAGAACCTCAGCATTAACAGAACAAAAAGTGACCCTCAAAAGATTATATATATAAAAAACCAAAGCATCGATTCCCTTGTTTGAGTTGAAGTTATGTCCTTGTTTCTAAAAATATGATATGCTACTTATATAAGACTCAACAACATAAACTTCTTGGTCTTTATTCTTCTAACTTCTAAGCATTTTTTCCTCCTCTTGCTGCTTTCTTTGTTCTTTGCTTTAATTTCTTATCTTTGAGGAGCCAAAGAATGGAACGTGGGGTTCTTGATGGTATCATCAGTCGGCTGCTTCAAGTCAGAGTGAGACCTGGGAAACAGGTTCAGCTTTCAGAGGCAGAAATCAGGCAGCTTTGTGCGGTTTCCAGAGATATCTTTTTGAAGCAGCCCAATCTGTTGGAACTGGAACCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAACTACTTATTCTTAGGCGATTATGTCGACCGTGGAAAGCAAAGCCTTGAGACAATATGTCTTCTTTTGGCATACAAGATAAAGTACCCTGAGAACTTCTTCCTCCTTAGAGGCAATCATGAATGTGCTTCCATAAACCGCGTCTACGGCTTCTACGACGAATGTAAACGGCGATTCAACGTCAGGCTATGGAAAATATTTGCAGATTGCTTCAACTGCATGCCTGTGGCAGCTATCATTGAGGAAAAGATTTTCTGTATGCATGGTGGACTCTCTCCAGAATTGCACAATCTAAGTCAGATAAGTAGTTTGCCGCGTCCAACCGAAGTACCCGAGAGTGGTCTACTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGACATTGAGGGTTGGGGAGACAATGAGCGCGGAGTTTCTTATACTTTTGGTGCTAGCAGGGTGACAGAATTTCTTGGAAAGCATGATCTTGACCTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTTCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTAAGGCCTGTGGAACACAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGGCAGTTCTTGATGCTGCTAGAGTATGACCCCATTGAGCTGACTTAGATCAATAAAGTTTGTAACTTGGCAAAAATTGACATGGACAAAGTGATATCCATGTTCACTTGAATGTGAAGGAAGGGCACATTCTCAATATGTACAATGTTGCCAACACAAATTTAGGAAGTCAGGTTTCATTTTTCTTTTCTTTCAGTGTTTTGATGTGAGAGACAGTTATGTAATTCCCCTTTTCATATCTCCTGCTGTATTATAAATGGCAGCATACTTTCGGCTTTCTTTCTTATTACTGTTGATTCATTTTAATATTGTCAATTTCAACTTTAAA
Coding sequences of Glyma.02g006000
>Glyma.02g006000.1 sequence-type=CDS polypeptide=Glyma.02g006000.1.p locus=Glyma.02g006000 ID=Glyma.02g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGTGGGGTTCTTGATGGTATCATCAGTCGGCTGCTTCAAGTCAGAGTGAGACCTGGGAAACAGGTTCAGCTTTCAGAGGCAGAAATCAGGCAGCTTTGTGCGGTTTCCAGAGATATCTTTTTGAAGCAGCCCAATCTGTTGGAACTGGAACCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAACTACTTATTCTTAGGCGATTATGTCGACCGTGGAAAGCAAAGCCTTGAGACAATATGTCTTCTTTTGGCATACAAGATAAAGTACCCTGAGAACTTCTTCCTCCTTAGAGGCAATCATGAATGTGCTTCCATAAACCGCGTCTACGGCTTCTACGACGAATGTAAACGGCGATTCAACGTCAGGCTATGGAAAATATTTGCAGATTGCTTCAACTGCATGCCTGTGGCAGCTATCATTGAGGAAAAGATTTTCTGTATGCATGGTGGACTCTCTCCAGAATTGCACAATCTAAGTCAGATAAGTAGTTTGCCGCGTCCAACCGAAGTACCCGAGAGTGGTCTACTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGACATTGAGGGTTGGGGAGACAATGAGCGCGGAGTTTCTTATACTTTTGGTGCTAGCAGGGTGACAGAATTTCTTGGAAAGCATGATCTTGACCTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTTCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTAAGGCCTGTGGAACACAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGGCAGTTCTTGATGCTGCTAGAGTATGA

>Glyma.02g006000.2 sequence-type=CDS polypeptide=Glyma.02g006000.2.p locus=Glyma.02g006000 ID=Glyma.02g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAACGTGGGGTTCTTGATGGTATCATCAGTCGGCTGCTTCAAGTCAGAGTGAGACCTGGGAAACAGGTTCAGCTTTCAGAGGCAGAAATCAGGCAGCTTTGTGCGGTTTCCAGAGATATCTTTTTGAAGCAGCCCAATCTGTTGGAACTGGAACCACCAATTAAGATATGTGGAGACATCCATGGTCAATATTCTGACCTTCTGAGACTTTTTGAGCATGGTGGATTGCCTCCTCGCTCCAACTACTTATTCTTAGGCGATTATGTCGACCGTGGAAAGCAAAGCCTTGAGACAATATGTCTTCTTTTGGCATACAAGATAAAGTACCCTGAGAACTTCTTCCTCCTTAGAGGCAATCATGAATGTGCTTCCATAAACCGCGTCTACGGCTTCTACGACGAATGTAAACGGCGATTCAACGTCAGGCTATGGAAAATATTTGCAGATTGCTTCAACTGCATGCCTGTGGCAGCTATCATTGAGGAAAAGATTTTCTGTATGCATGGTGGACTCTCTCCAGAATTGCACAATCTAAGTCAGATAAGTAGTTTGCCGCGTCCAACCGAAGTACCCGAGAGTGGTCTACTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGACATTGAGGGTTGGGGAGACAATGAGCGCGGAGTTTCTTATACTTTTGGTGCTAGCAGGGTGACAGAATTTCTTGGAAAGCATGATCTTGACCTGATTTGTAGAGCACACCAGGTTGTTGAAGATGGATATGAATTTTTTTCCAATAGACAACTTGTGACTATCTTTTCTGCACCTAACTACTGTGGAGAATTTGACAATGCTGGAGCAATGATGACTGTTGATGAGACACTTATGTGCTCTTTTCAGATACTAAGGCCTGTGGAACACAGAAAGCCTAAGTTTGGTTTTGGGAGCAAAACTACATTCAAGGCAGTTCTTGATGCTGCTAGAGTATGA
Predicted protein sequences of Glyma.02g006000
>Glyma.02g006000.1.p sequence-type=predicted peptide transcript=Glyma.02g006000.1 locus=Glyma.02g006000 ID=Glyma.02g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERGVLDGIISRLLQVRVRPGKQVQLSEAEIRQLCAVSRDIFLKQPNLLELEPPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRLWKIFADCFNCMPVAAIIEEKIFCMHGGLSPELHNLSQISSLPRPTEVPESGLLCDLLWSDPSKDIEGWGDNERGVSYTFGASRVTEFLGKHDLDLICRAHQVVEDGYEFFSNRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVEHRKPKFGFGSKTTFKAVLDAARV*

>Glyma.02g006000.2.p sequence-type=predicted peptide transcript=Glyma.02g006000.2 locus=Glyma.02g006000 ID=Glyma.02g006000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MERGVLDGIISRLLQVRVRPGKQVQLSEAEIRQLCAVSRDIFLKQPNLLELEPPIKICGDIHGQYSDLLRLFEHGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRLWKIFADCFNCMPVAAIIEEKIFCMHGGLSPELHNLSQISSLPRPTEVPESGLLCDLLWSDPSKDIEGWGDNERGVSYTFGASRVTEFLGKHDLDLICRAHQVVEDGYEFFSNRQLVTIFSAPNYCGEFDNAGAMMTVDETLMCSFQILRPVEHRKPKFGFGSKTTFKAVLDAARV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo