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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43330.1 | AT | Lactate/malate dehydrogenase family protein | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006099 | GO-bp | tricarboxylic acid cycle | EnsemblGenomes | N/A | IEA |
| GO:0006107 | GO-bp | oxaloacetate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006108 | GO-bp | malate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006734 | GO-bp | NADH metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019752 | GO-bp | carboxylic acid metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016615 | GO-mf | malate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016616 | GO-mf | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016746 | GO-mf | transferase activity, transferring acyl groups | EnsemblGenomes | N/A | IEA |
| GO:0030060 | GO-mf | L-malate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| KOG1496 | KOG | Malate dehydrogenase | JGI | N/A | IEA |
| PTHR23382 | Panther | MALATE DEHYDROGENASE | JGI | N/A | IEA |
| PF00056 | PFAM | lactate/malate dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PF02866 | PFAM | lactate/malate dehydrogenase, alpha/beta C-terminal domain | JGI | N/A | IEA |
| GLUCONEO-PWY | SoyCyc9 | gluconeogenesis I | Plant Metabolic Network | ISS | |
| GLYOXYLATE-BYPASS | SoyCyc9 | glyoxylate cycle | Plant Metabolic Network | ISS | |
| MALATE-ASPARTATE-SHUTTLE-PWY | SoyCyc9 | L-aspartate degradation II | Plant Metabolic Network | ISS | |
| PWY-5464 | SoyCyc9 | superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle | Plant Metabolic Network | ISS | |
| PWY-561 | SoyCyc9 | superpathway of glyoxylate cycle and fatty acid degradation | Plant Metabolic Network | ISS | |
| PWY-5690 | SoyCyc9 | TCA cycle II (plants and fungi) | Plant Metabolic Network | ISS | |
| GN7V-52413 | SoyCyc9-rxn | malate dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.02g005500 not represented in the dataset |
Glyma.02g005500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g006500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g00810 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g005500.2 sequence-type=transcript locus=Glyma.02g005500 ID=Glyma.02g005500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CACAACCCACACTCACTCTTTCACTCTTCTTCGTCTCAAATCTCTTCGTTCCTTCGATTCGTTCCATTTCTTCCAAAATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGTAAGTGTTTTGTCACTTAATATTGTGTTTATCCATATTATCTCACCATCTTTGGTGTTAACCCTTGCTTAATTTGCCGGTGTTTGTTTTTGCTTTAATATTTTTACATTTTTATATTAAAAAGTCACTGAAATTTCAACAATTCGGGGTAGAGCTTTCTAATGCCACTGAAATTA
>Glyma.02g005500.1 sequence-type=CDS polypeptide=Glyma.02g005500.1.p locus=Glyma.02g005500 ID=Glyma.02g005500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGACTTTCCATTGATGAGTTCTCAAGGAAGAAGTTGGACTTGACTGCAGAAGAGCTTTCTGAGGAGAAGGCATTGGCTTACTCATGCCTAAATTAG >Glyma.02g005500.2 sequence-type=CDS polypeptide=Glyma.02g005500.2.p locus=Glyma.02g005500 ID=Glyma.02g005500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCAAAGACCCAGTTCGCGTTCTCGTCACTGGAGCTGCAGGGCAAATTGGGTATGCTCTTGTCCCTATGATTGCTAGGGGAGTGATGTTGGGTCCTGACCAGCCCGTGATCCTCCACATGCTTGACATTCCTCCGGCAGCAGAGTCATTGAATGGGGTTAAAATGGAATTGGTGGATGCTGCATTCCCTCTTCTTAAAGGTGTTGTTGCCACAACTGATGTGGTTGAGGCATGCACTGGGGTCAATATTGCCGTGATGGTTGGTGGATTCCCAAGAAAAGAAGGTATGGAGAGGAAGGATGTGATGACTAAGAACGTCTCCATTTACAAGTCCCAGGCTTCTGCCCTTGAAAAGCATGCTGCTGCCAACTGCAAGGTTCTTGTTGTTGCTAACCCAGCAAACACCAATGCATTGATCTTGAAGGAATTTGCTCCATCTATTCCCGAGAAGAACATTTCTTGTTTGACTAGATTGGATCACAACAGGGCATTGGGCCAAATCTCTGAAAGACTGACCGTTCAGGTTTCTGATGTAAAGAATGTCATTATCTGGGGCAATCACTCATCAACCCAGTATCCTGATGTTAATCATGCAACTGTTGCAACCTCAGCTGGGGAGAAGCCCGTCCGTGAGCTTATAGCTGATGATGCCTGGTTGAATGGGGAATTCATTACTACTGTTCAACAACGTGGCGCTGCAATTATCAAAGCTAGAAAGCTTTCAAGTGCACTATCAGCTGCTAGTGCTGCTTGTGACCATATTAGAGACTGGGTTCTTGGAACTCCTCAGGGCACTTGGGTATCAATGGGAGTATATTCTGATGGTTCCTACAATGTTCCAGCTGGACTTATATATTCATTCCCCGTCACTTGTGCCAATGGGGAATGGGCAATAGTTCAAGGTAAGTGTTTTGTCACTTAA
>Glyma.02g005500.1.p sequence-type=predicted peptide transcript=Glyma.02g005500.1 locus=Glyma.02g005500 ID=Glyma.02g005500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLTVQVSDVKNVIIWGNHSSTQYPDVNHATVATSAGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQGLSIDEFSRKKLDLTAEELSEEKALAYSCLN* >Glyma.02g005500.2.p sequence-type=predicted peptide transcript=Glyma.02g005500.2 locus=Glyma.02g005500 ID=Glyma.02g005500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAKDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKVLVVANPANTNALILKEFAPSIPEKNISCLTRLDHNRALGQISERLTVQVSDVKNVIIWGNHSSTQYPDVNHATVATSAGEKPVRELIADDAWLNGEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPQGTWVSMGVYSDGSYNVPAGLIYSFPVTCANGEWAIVQGKCFVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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