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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08530.1 | AT | 51 kDa subunit of complex I | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005739 | GO-cc | mitochondrion | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0070469 | GO-cc | respiratory chain | EnsemblGenomes | N/A | IEA |
| GO:0003954 | GO-mf | NADH dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0008137 | GO-mf | NADH dehydrogenase (ubiquinone) activity | EnsemblGenomes | N/A | IEA |
| GO:0010181 | GO-mf | FMN binding | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016651 | GO-mf | oxidoreductase activity, acting on NAD(P)H | EnsemblGenomes | N/A | IEA |
| GO:0016651 | GO-mf | oxidoreductase activity, acting on NAD(P)H | JGI | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0051287 | GO-mf | NAD binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051539 | GO-mf | 4 iron, 4 sulfur cluster binding | JGI | N/A | IEA |
| KOG2658 | KOG | NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit | JGI | N/A | IEA |
| PTHR11780 | Panther | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1) | JGI | N/A | IEA |
| PF01512 | PFAM | Respiratory-chain NADH dehydrogenase 51 Kd subunit | JGI | N/A | IEA |
| PF10531 | PFAM | SLBB domain | JGI | N/A | IEA |
| PF10589 | PFAM | NADH-ubiquinone oxidoreductase-F iron-sulfur binding region | JGI | N/A | IEA |
| PWY-3781 | SoyCyc9 | aerobic respiration I (cytochrome c) | Plant Metabolic Network | ISS | |
| PWY-4302 | SoyCyc9 | aerobic respiration III (alternative oxidase pathway) | Plant Metabolic Network | ISS | |
| PWY-5083 | SoyCyc9 | NAD/NADH phosphorylation and dephosphorylation | Plant Metabolic Network | ISS | |
| GN7V-55921 | SoyCyc9-rxn | NADH dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.02g003300 not represented in the dataset |
Glyma.02g003300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.10g005500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma02g00590 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.02g003300.1 sequence-type=CDS polypeptide=Glyma.02g003300.1.p locus=Glyma.02g003300 ID=Glyma.02g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGGGGCATTCTTTCTGTAAGGACAGCCTTGGTTCAACATCGTAGTGAGAAATTGGGCCTTGGTTTCAGGCTATTTAGCACTCAGGGTGCTTCCACTGCTAGTACCCCACAGCCGCCGCCACCACCTCCACCACCAGAGAAAACCCATTTTGGTGGCCTTAAGGATGAGGACAGGATATTTACTAACTTATATGGGCTGCATGATCCTTTTCTCAAAGGTGCCATGAAACGAGGGGATTGGCATCGAACGAAAGATTTGGTACTTAAGGGTACTGATTGGATTGTGAGTGAAATGAAGAAGTCTGGCCTCCGTGGGCGTGGCGGTGCTGGTTTCCCTTCGGGCCTCAAATGGTCATTCATGCCAAAAGTATCCGATGGCCGCCCTTCATATCTTGTTGTTAATGCTGATGAAAGTGAACCTGGAACTTGCAAAGACAGGGAAATTATGCGGCATGACCCACATAAATTGTTAGAAGGTTGCTTGATTGCTGGAGTAGGAATGAGGGCTAGTGCTGCTTACATCTACATCAGGGGTGAATATGTGAACGAACGTAAGAATCTCGAAAAGGCTAGGCAAGAGGCTTATGCAGCTGGTTTGTTGGGTAAGAATGCTTGTGGATCAGGCTATGATTTTGATGTTCATATCCACTACGGTGCTGGAGCTTATATTTGTGGTGAGGAAACAGCCCTCTTGGAGAGTCTTGAAGGGAAACAAGGTAAACCAAGATTGAAGCCGCCCTTCCCAGCCAATGCTGGGTTGTATGGATGTCCTACCACTGTCACAAATGTGGAAACTGTTGCTGTTTCTCCAACCATTCTAAGGCGTGGGCCTGAATGGTTTGCCAGTTTTGGTAGGAAGAACAATGCTGGGACAAAGTTGTTTTGTGTGTCGGGGCATGTGAACAAGCCTTGCACTGTTGAGGAGGAAATGAGTATTCCACTGAAGGAGTTGATAGAGAGGCACTGTGGAGGTATTCGAGGAGGATGGGATAATTTACTTGCAGTGATTCCGGGAGGATCATCTGTTCCTCTGATTCCAAAGCATGTATGTGATGATATCTTTATGGATTATGATGCATTAAAGGCTGTTGGGACAGGGTTGGGGACTGCAGCTGTAATTGTAATGGATAAATCTACGGATGTTGTGGATGCTATTGCAAGGCTTTCCTACTTCTACAAGCACGAAAGTTGTGGGCAGTGCACACCATGCAGGGAGGGAACTGGTTGGCTTTGGACAATCATGGAAAGAATGAAAGTTGGGAATGCCAAGCTAGAAGAAATTGATATGCTTCAGGAGTTGACTAAACAAATTGAAGGGCATACAATTTGTGCCTTGGGTGATGCTGCTGCATGGCCAGTGCAGGGTCTTATCAAGCATTTCAGGCCTGAGCTTGAGAGAAGGATTAGAGAACATGCAGAAAGGGAGCTGCTGCAGGCCACTGGTTAG
>Glyma.02g003300.1.p sequence-type=predicted peptide transcript=Glyma.02g003300.1 locus=Glyma.02g003300 ID=Glyma.02g003300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRGILSVRTALVQHRSEKLGLGFRLFSTQGASTASTPQPPPPPPPPEKTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGTDWIVSEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLEKARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCVSGHVNKPCTVEEEMSIPLKELIERHCGGIRGGWDNLLAVIPGGSSVPLIPKHVCDDIFMDYDALKAVGTGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWTIMERMKVGNAKLEEIDMLQELTKQIEGHTICALGDAAAWPVQGLIKHFRPELERRIREHAERELLQATG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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