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Report for Sequence Feature Glyma.02g002300

Feature Type:gene_model
Chromosome:Gm02
Start:271501
stop:273419
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g002300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G36240.1AT Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein JGI N/AIEA
AT1G77940.1AT Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
KOG2988 KOG 60S ribosomal protein L30 JGI N/AIEA
PTHR11449Panther RIBOSOMAL PROTEIN L30 JGI N/AIEA
PF01248PFAM Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JGI N/AIEA

Expression Patterns of Glyma.02g002300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.02g002300
ParalogEvidenceComments
Glyma.10g002400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.02g002300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g00490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g002300
>Glyma.02g002300.2 sequence-type=transcript locus=Glyma.02g002300 ID=Glyma.02g002300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTAATGTGTAGTGGCAGACGCAGACGCCGTGACTAGACACTCATCTCACTCGCGCCATCTTAGGGTTTCTCCTTTTGTTTCGCAACATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAGTAAGttcttaatcttatgcttttctttcattcttattcttttttaatgttaATATGAATTATATGATATGTGGAAAAATCTTCAGTTTCTGATTTATTTTATAGTTTTTGTAATCTGCCCCGCATGCATTTAACTCGGTTTCAGAGAAAGCAACATAATGCTTGAGTCAGTCATATGACTTGAATGTCCTGGATTAAAACCTGTAAACTGGTTTACTTGAACTTGGATTTTAAGCATTTGGTGATTAATTTCCTTTGTTGACGAATTTATATGATCTGCATTTATATTTTATTGTAGCTGATGCAAGTTTATAGCTATTAGTATTTTGATGGTTACACATGCAATATTGGTTGCTGAACTTGTATAAATTATTGCACTAACAAATGGATTGTATTTTAACTTATTGATGATAAT
Coding sequences of Glyma.02g002300
>Glyma.02g002300.1 sequence-type=CDS polypeptide=Glyma.02g002300.1.p locus=Glyma.02g002300 ID=Glyma.02g002300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAACAATGTGGATTTGGGCACTGCATGTGGAAAATATTACAGAGTGTGCTGCCTTAGCATTATTGATCCTGGTGATTCTGATATCATCAAGACACTGCCTGGCGACCAGTAA

>Glyma.02g002300.2 sequence-type=CDS polypeptide=Glyma.02g002300.2.p locus=Glyma.02g002300 ID=Glyma.02g002300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTGCCGCTAAGAAAACTAAGAAGACCCATGAGAGCATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAATTCACCCTCGGTTACAAGACCGTTCTCAAATCTCTTAGGAACTCCAAAGGAAAATTGATTATCATTGCTAACAACTGCCCCCCTTTGAGAAAGTCAGAGATTGAATACTATGCTATGTTGGCAAAGGTTGGAGTTCATCATTACAATGGGAGTAAGTTCTTAATCTTATGCTTTTCTTTCATTCTTATTCTTTTTTAA
Predicted protein sequences of Glyma.02g002300
>Glyma.02g002300.1.p sequence-type=predicted peptide transcript=Glyma.02g002300.1 locus=Glyma.02g002300 ID=Glyma.02g002300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKTLPGDQ*

>Glyma.02g002300.2.p sequence-type=predicted peptide transcript=Glyma.02g002300.2 locus=Glyma.02g002300 ID=Glyma.02g002300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVAAKKTKKTHESINNRLALVMKSGKFTLGYKTVLKSLRNSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSKFLILCFSFILILF*






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