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Report for Sequence Feature Glyma.02g002000

Feature Type:gene_model
Chromosome:Gm02
Start:237689
stop:245007
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.02g002000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63410.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008171GO-mf O-methyltransferase activity JGI N/AIEA
GO:0008757GO-mf S-adenosylmethionine-dependent methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1540 KOG Ubiquinone biosynthesis methyltransferase COQ5 JGI N/AIEA
PTHR10108Panther METHYLTRANSFERASE JGI N/AIEA
PTHR10108:SF9Panther JGI N/AIEA
PF08241PFAM Methyltransferase domain JGI N/AIEA
PWY-1422SoyCyc9 vitamin E biosynthesis (tocopherols) Plant Metabolic Network ISS
PWY-1581SoyCyc9 plastoquinol-9 biosynthesis I Plant Metabolic Network ISS
PWY-5864SoyCyc9 superpathway of plastoquinol biosynthesis Plant Metabolic Network ISS
GN7V-68007SoyCyc9-rxn 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.02g002000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.02g002000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma02g00440 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.02g002000
>Glyma.02g002000.2 sequence-type=transcript locus=Glyma.02g002000 ID=Glyma.02g002000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGTAAATACAGAAAATCCAAAGCGCATATAGTTCAAGTGATGGTAAGGCCACAACTCACAAGTGGCAAGCATCAGCTAGCGCCAGGATTATGTGGTGCATATCCACCAATCCCCTGTCTTTGTCCCTCACCTCATAATCCTTACTATCACCACTTTACCACTTCCACGCTTATTTCTAATTGATCCTTTTCCTGTCTTGTTTTCATGACATAAACTATCATCAACTGTTGCTTTCCATTTTGGCTATAATTCCACAAAATGTGCCATTCATTGCAAGTGTAATATTACTAGCATTTCCATATATCAGTCCATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGtcagcatcatcatcatcatcatcTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAAGTTTGGAGAAAGTAACTCGGGTAGGAAGGTCAAGTTTTCCCTCCACACATCTCTAAACGACTGTTTGTGAAGGATAATAATTCAATCTTGAATCTTTCCATCTTGCCAACATAGTAGGAAAGAGTTACTTAAGGATGAAATGCTTCAAAACCATTAGCTTAGTTTTGTGCCATTACTAGCTTCACTATGTTTTGTATTTGTCATTGTTGCTTTGGCAGAGAAATATAGAATGTGTGTTGGCAGCCAATTGTTCAATGAACCATGGCAGGATCATCAAAATGTTGTGCTTCTTTTGCTTTGCTTTGTACCAAATGGACAAGACAAGGTAACCATGACAACATTCAAATATGTTTGTTTTAGCTTTTATTTGTATATGTGCGTTGGTGGCGAGTTTTAACTGAATTTGAATATGCTTTTTTAATCCCCAAATACATTTTTAATTTATTTACCCTTGACAAGTATTGTTCAATGTTTAAGCACGAATTATCGTTTTCACATGTTTCGTTTAGTACATTAGTTTATCTACTGCCATCTTGATTCTTGAGAGAAGTAATAATGTC
Coding sequences of Glyma.02g002000
>Glyma.02g002000.1 sequence-type=CDS polypeptide=Glyma.02g002000.1.p locus=Glyma.02g002000 ID=Glyma.02g002000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGTCAGCATCATCATCATCATCATCTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAA

>Glyma.02g002000.2 sequence-type=CDS polypeptide=Glyma.02g002000.2.p locus=Glyma.02g002000 ID=Glyma.02g002000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCCTTAATGCTCAATGGAGCTCATCAAAATCCAAACCTCATTAGTGGCATAGCTCCAAATGGCCTTAACTTTCACAACAAGTGTTTATTCCAAAAGGGTGTGCTGTCTCATGGTAACAAGTTAAGGGTGGTCAGAAAAAACTTCACTCCCAAAGGCAGCATGTCAGCATCATCATCATCATCATCTAGGCCTGGTTCTCAGCCAAGGTTCATCCAGCACAAGAAGGAGGCATTTTGGTTCTACAGGTTTCTCTCTATTGTGTATGACCACATCATAAACCCGGGGCACTGGACCGAAGACATGAGAGACGAGGCACTGGAGCCTGCTGATCTCTACAACCGCAACCTGAGAGTGGTGGATGTTGGAGGTGGAACTGGCTTCACCACTCTTGGTATAGTGAAGCATGTGGACGCCAAAAACGTTACAATTCTCGACCAGTCGCCACACCAGCTCGCCAAGGCTAAGCAGAAGGAGCCCTTGAAAGAATGCAAGATTGTTGAAGGGGATGCTGAAGATCTTCCATTTCCAACTGATTATGCTGATAGATATGTTTCTGCTGGAAGTATTGAATACTGGCCAGATCCGCAGCGTGGCATTACGGAAGCATACAGAGTGCTAAGGATAGGAGGCATAGCTTGTGTGATTGGTCCTGTACACCCAACATTTTGGCTGTCTAGGTTCTTTGCAGATGTGTGGATGCTCTTCCCCAAGGAGGAAGAGTACATTGAATGGTTTAAGAAGGCTGGTTTCAAAGATGTTAAGCTCAAAAGGATTGGTCCAAAATGGTATCGTGGGGTGCGCAGGCACGGCCTTATCATGGGTTGCTCAGTCACAGGTGTGAAGCCTTTGTCTGGAGACTCTCCCCTCCAGCTTGGTCCCAAGGTAGAGGATGTAAAGAAGCCTGTAAATCCATTTGTGTTTCTTTATCGGTTCATTCTTGGTACAATTGCATCCACTTACTTCGTACTAGTGCCAATTTACATGTGGATCAAAGACAAAATTGTTCCAAGGGGCATGCCCATCTAA
Predicted protein sequences of Glyma.02g002000
>Glyma.02g002000.1.p sequence-type=predicted peptide transcript=Glyma.02g002000.1 locus=Glyma.02g002000 ID=Glyma.02g002000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLMLNGAHQNPNLISGIAPNGLNFHNKCLFQKGVLSHGNKLRVVRKNFTPKGSMSASSSSSSRPGSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYNRNLRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGITEAYRVLRIGGIACVIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVKKPVNPFVFLYRFILGTIASTYFVLVPIYMWIKDKIVPRGMPI*

>Glyma.02g002000.2.p sequence-type=predicted peptide transcript=Glyma.02g002000.2 locus=Glyma.02g002000 ID=Glyma.02g002000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLMLNGAHQNPNLISGIAPNGLNFHNKCLFQKGVLSHGNKLRVVRKNFTPKGSMSASSSSSSRPGSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDEALEPADLYNRNLRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGITEAYRVLRIGGIACVIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVKKPVNPFVFLYRFILGTIASTYFVLVPIYMWIKDKIVPRGMPI*






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